Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 445 / 7e-150 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 240 / 5e-70 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 239 / 2e-69 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 199 / 1e-55 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 190 / 2e-52 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G33290 177 / 5e-48 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 172 / 3e-46 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT4G13460 172 / 3e-46 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G24740 148 / 2e-37 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G23740 121 / 1e-28 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001798 [exp] 931 / 0 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 455 / 2e-152 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 453 / 3e-152 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 426 / 2e-141 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 234 / 1e-67 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 228 / 2e-64 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 226 / 7e-64 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 206 / 3e-58 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 193 / 2e-53 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162801 [exp] 541 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 479 / 2e-162 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 442 / 3e-148 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 254 / 4e-74 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 216 / 5e-62 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 214 / 3e-61 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 206 / 3e-58 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 202 / 9e-57 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 174 / 1e-46 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 173 / 2e-46 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10002571 pacid=23160128 polypeptide=Lus10002571 locus=Lus10002571.g ID=Lus10002571.BGIv1.0 annot-version=v1.0 ATGTCAGATGTGGGTTTCAATCTTGTTGGTGGTGTACGAGGGGCTGTTTCAAAGCGCAGATTTAGCCCAAGACTTAGGGATATCTTGAAGCTGAAGAGAC CAGGCAACCGAGACAAAGTAGCTCCAAGATTCTACGAACAGCTGGACTACCTTCACAACCAGAGAGTACGGAGAATGAGCAATGCTAATAGAGATGCAAA ATGTGTTGATATTGGGGACATAATTGACCTAGAAGACAACAATCAAGTGAAATGGACTGCCTATGATAGTTTTGTTGCTGATACTCTAAAAGAGACAGAA GCTACGAGAAGGTCTAATGACTCCTACCTTGATTTTGTTCAGATACCGACCACAAAGGAAAATCTGTATCCCAAAGTGAAACTTGGTCTTCTACCCGGCA TTGTTACCGGACATAGATTCTTCTCCCGAGCTGAAATGGTGGCGATAGGTTTCGAGCTATGTTGGCTGACTGGAATTGATTACTTAAGAAAGTATTCTAA AAGACTGAACAACATGGAGCAATGCATACCAGTTAGACTCATTTGTGGACACAAATCTTCTGGTAACAATGGTTCGAAAGAGTATACATACTGTGGATTG TACAAGATTATGAATCGTTCTTGTGTGGAAAGTAAACATGGACAGTCTGTCTTCACATACCGGTTGAAGAAACTTTTAGGAGAACCCAAGACGAGTGGAG ACCAGATTCCTAGTGAAAGAGGAAGGCAGTCTACAATTTCTATTAAATTGCCAGGCTTGGTGTCTGAAGATATATCTTATGGTGAAGAAGCACTGTCTAT TGCTGTTACGAATACAGTTGATTCGCCACCTATTGCACCTTCAGGCAAGTTCACTTATCGGTTGAAACTTTATTTGGCAGAGGCTTGTAGAAGGCTTTTA CCCTTTTCAGATGATTTTGCTTATTTCAAGTACTGCAAGTCCATTCAAGTTGCAACTGGTGTAATCATTCCTCCATCTGCCTCTGGATGCAAATGCAATG GAAGTTGTACAAATCCAAAGACTTGCTCTTGTGCTCAACTTAATGGTTTTGACTTCCCGTACGCAAATCAAGATGGTGGCAGATTGATTGAAGCGAAAGA CATAGTATATGAATGCGGCCCAGGATGTAGCTGTGGGTCTAAATGCACTAATCGTGTATCTCAGCGAGGGTTAAAATACCAACTTGAGATATATCGCACA AATAGAAAAGGGTGGGCTGTTAGGTCCTGGGACCCCATACCTGCTGGTGCTCCAGTTTGTGAATATACTGGACTTCTCAGGAGGAGTGCAGAATTGGATA GCGTCTGCGACAATGACTACATATTTGACATTGATTGCTTGCACACCATGCACGGGATAGGGGGAAGAGAGAAGCGAGAAGTCAGTGTCTCTGTAACAAG TTCTACTCCAGGAAAATTAGATGCTACATCATTTCCAGAAAGCGAGTCTGAGTTTTGTATAGATGCAGGTTCCTGCGGTAATGTTGCTAGATTCATCAAT CACAGCTGTGAGCCTAACCTATTTGTTCAATGCATTTTGAGCTCACACCATGATCTCAGACTGGCTCGGATAGTGTTGTTTGCAGCAGAAGATATTCCTC CCATGGATGAGCTTACATATGACTATGGTTACGAGCTGGGCAGTGTAATTGATGGAGATGGTAATGTAAAGGAGCTGGAATGCCATTGTGGAACAAGCGA ATGTCGGGGCCGTTTATACTGA
AA sequence Show only first row Show all	>Lus10002571 pacid=23160128 polypeptide=Lus10002571 locus=Lus10002571.g ID=Lus10002571.BGIv1.0 annot-version=v1.0 MSDVGFNLVGGVRGAVSKRRFSPRLRDILKLKRPGNRDKVAPRFYEQLDYLHNQRVRRMSNANRDAKCVDIGDIIDLEDNNQVKWTAYDSFVADTLKETE ATRRSNDSYLDFVQIPTTKENLYPKVKLGLLPGIVTGHRFFSRAEMVAIGFELCWLTGIDYLRKYSKRLNNMEQCIPVRLICGHKSSGNNGSKEYTYCGL YKIMNRSCVESKHGQSVFTYRLKKLLGEPKTSGDQIPSERGRQSTISIKLPGLVSEDISYGEEALSIAVTNTVDSPPIAPSGKFTYRLKLYLAEACRRLL PFSDDFAYFKYCKSIQVATGVIIPPSASGCKCNGSCTNPKTCSCAQLNGFDFPYANQDGGRLIEAKDIVYECGPGCSCGSKCTNRVSQRGLKYQLEIYRT NRKGWAVRSWDPIPAGAPVCEYTGLLRRSAELDSVCDNDYIFDIDCLHTMHGIGGREKREVSVSVTSSTPGKLDATSFPESESEFCIDAGSCGNVARFIN HSCEPNLFVQCILSSHHDLRLARIVLFAAEDIPPMDELTYDYGYELGSVIDGDGNVKELECHCGTSECRGRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	0	1
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	1.4	0.9361
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	1.7	0.9200
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	4.0	0.9375
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	5.9	0.9148
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	6.0	0.9021
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	6.3	0.9190
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	6.5	0.9169
AT1G15420			unknown protein		Lus10030351 [exp]	6.6	0.9107
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	6.7	0.9057
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	9.1	0.8707

Compare expression of checked genes

Lus10002571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.