Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28100 310 / 9e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001800 [exp] 479 / 5e-172 AT1G28100 222 / 4e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163800 [exp] 352 / 4e-122 AT1G28100 362 / 1e-126 unknown protein Potri.001G066000 [exp] 340 / 2e-117 AT1G28100 362 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002573 pacid=23160140 polypeptide=Lus10002573 locus=Lus10002573.g ID=Lus10002573.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGCAAATTCCTCTGGTGGTCGTCCATCCTCTGGATATGGGACGCCTCCTTGGATTTTCAAAGGCAGGCATGTATTCTTTATTAACTTTT GCGTTGACTCCACTTCTTCTCATACTTCTCTGTTTTCCTTCCTTTTCTCTTTCATTTTTCGTTTGAACCAACGATTTTATCCCAATTTCAGTGCCTTATA CCAGCTTCATCTTGTTAAGGCGGACACCGCTCGAGCATTTGTACCGAAGAACTTGAGACTAGTTGAAGCTTTTGGATACACTTTGGGCGGGTTCTTCCTC GCAAACTATGAAGATAGCCCTGCAGGGTCTTTCGATGAGCTGGTTGTGATCGCGGGAATCGTGTGGAACCCACCAACATCTTGCGCATGGGCGGCCAGGG TCCTTGTTAGCAGTGAAGTTGCATGTCATCATGGACGAAAGGAAGTGGGTCTTCCAAGTCACGTTGCCAAGTTCTCAAAGAGGACAATGGCAGTTCCAGT GAACCAAAAGAGTAGAGGCAGTAGCTTCCTAAACTTGATTGGCTTAGGTGCATCAGTTTCTACACCAACAGATTGCTCGGATGTTCAAGTCACTGAAGTG GCAGGTCATTCAAGAACTAATATTTGTAATATCAGCCTCGCCACGCTTGTTCCAGGGATGAAGCTGGACCAGTGGACAGGGCCAACGATGAGGTTATCCT TACCAAGTTTCAGCGGCCTAACGGAGTACAATCCAGACCTTTTGAAGTATAGTTGCGACCTTAAATGCAGGATAAGAGCAGTGCAGCCAGCTATAGCATC ATCGATGAGAAATCAAGATTTGGAAGAAGCCGAAGACTCTGGTACTATAGCAAATAAGAAAGCCAATCTAACTCTATCTATTCTATTATCAAAGCCCTTT TTAGCTTTGGAATTCAGCTCACTGGAAATGAAAGTTGGGGCCCCTATAGTTTGTCTCTGA
AA sequence Show only first row Show all	>Lus10002573 pacid=23160140 polypeptide=Lus10002573 locus=Lus10002573.g ID=Lus10002573.BGIv1.0 annot-version=v1.0 MEEEANSSGGRPSSGYGTPPWIFKGRHVFFINFCVDSTSSHTSLFSFLFSFIFRLNQRFYPNFSALYQLHLVKADTARAFVPKNLRLVEAFGYTLGGFFL ANYEDSPAGSFDELVVIAGIVWNPPTSCAWAARVLVSSEVACHHGRKEVGLPSHVAKFSKRTMAVPVNQKSRGSSFLNLIGLGASVSTPTDCSDVQVTEV AGHSRTNICNISLATLVPGMKLDQWTGPTMRLSLPSFSGLTEYNPDLLKYSCDLKCRIRAVQPAIASSMRNQDLEEAEDSGTIANKKANLTLSILLSKPF LALEFSSLEMKVGAPIVCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28100			unknown protein		Lus10002573 [exp]	0	1
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	2.8	0.8370
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	7.4	0.8206
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	7.5	0.8248
AT1G28100			unknown protein		Lus10001800 [exp]	8.8	0.8033
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	9.5	0.8405
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	11.0	0.7996
AT2G41950			unknown protein		Lus10016243 [exp]	11.7	0.8284
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	13.0	0.8307
AT5G50090			unknown protein		Lus10004229 [exp]	16.3	0.8290
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	17.2	0.8245

Compare expression of checked genes

Lus10002573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.