Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13260 503 / 9e-174 unknown protein AT3G48860 476 / 2e-162 unknown protein AT5G23700 382 / 7e-126 unknown protein AT4G25070 367 / 4e-118 unknown protein AT4G08630 317 / 4e-98 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001801 [exp] 809 / 0 AT5G13260 591 / 0.0 unknown protein Lus10036015 [exp] 489 / 4e-168 AT3G48860 675 / 0.0 unknown protein Lus10043194 [exp] 480 / 1e-164 AT3G48860 684 / 0.0 unknown protein Lus10032546 [exp] 477 / 4e-164 AT3G48860 595 / 0.0 unknown protein Lus10016721 [exp] 473 / 7e-162 AT3G48860 674 / 0.0 unknown protein Lus10001720 [exp] 291 / 7e-89 AT4G08630 471 / 5e-155 unknown protein Lus10004138 [exp] 265 / 3e-79 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164100 [exp] 653 / 0 AT5G13260 529 / 0.0 unknown protein Potri.001G065800 [exp] 611 / 0 AT3G48860 528 / 0.0 unknown protein Potri.012G105400 [exp] 507 / 5e-175 AT3G48860 546 / 0.0 unknown protein Potri.015G104600 [exp] 462 / 4e-157 AT3G48860 452 / 3e-153 unknown protein Potri.005G044600 [exp] 379 / 3e-123 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002574 pacid=23160145 polypeptide=Lus10002574 locus=Lus10002574.g ID=Lus10002574.BGIv1.0 annot-version=v1.0 ATGAACAGTAGGAGCAGGACTCAGAGTCCCGTCTACGCCAGGAGGCAATGGGGCTCCGACTCTTCCGCAGCAGCAATGGCAACAGCTACTACAAGTCCAT CAATTTTACCAGCTCATCACCACGCCCGCTCCTCCTCTGCTAGTGGCCTCTCCGCCATCAAGCGCAACCAGAACTACGCCGCCAAGGCTGCTGCCCAGCG TCTTGCTCAGGTCATGGCTTCCCAAACTGCTGATGACGATGACGATGACGAAGACAATCCCGACGACCTGGGTTTTCGTTACAGTGTTCCTCCTCCTCCT CCTTTATCTCTTTCCCGTACTGCTGCTACCAGGATCGCCAGATCCCCTTCCCCTGCTGCTACTATACCGCTGAAATTGGCCGAAGAAACTCCCTCAGTTC GATCAACATCCGCTGGAAGGCCAGCGATGTCATATCGAGCAGCAGCACCACCACCTGCTAAAGGGTCTTTGAGGACCGCAGTCTCCTTACCACCACTTGA GCCACCTAAAAATGGGTTCAGGGACGGAAAGAGATTCCCATCTGATGAAGGATATCCGAACTCGAAAGATTCTGGAGATTATCATGAGGCTTCTGAACTT CGTGATGAACTTGATATGCTACAAGAAGATAATGACAGCATGGTCGAGAAGCTTAGGCTCGAGGAGGAAAGGTGTCAAGAAGCAGAGGACAGAGTCAGGG AACTCGAGAAGCAGGTTGCTTCTCTCGGAGAGGGAGTATCTCTTGAAGCAAAATTGTTGAGCAGGAAGGAAGCTGCATTGCGTCAAAGAGAAGCTGCTCT TAAAGATGCCAAGCAGGATTCGGTGGATAAGGAAATTGCTTCTGTGAGGTCTGATGTACAAAATGCTAAAGACGAGGCTTCAGTTGTACTGAGACAATTG CATGGAGCTGAATCTGAAGTAAATGCCCTTCGTTCAATGACGCAAAGAATGGTTTTAACCCAGAAAGAAATGGAAGAAGTTGTTCTTAAGAGGTGTTGGC TGGCTCGTTACTGGGGCTTAGCTGCAAAATACGGTATCTGTTCGGATGTTGCTGTGCCAAAGCATGAATACTGGTCATCATTAGCACCTCTTCCGTTTGA AGTTGTTCTTTCCGCTGGACAAAAAGCTAAAGAGGAACGTTGGGAAAAAGGTGATGCTGGTGACAAGGAGAGGAGAAACAAACTTGCACAGGATTTGAAC GAGCTCACTGGTGAAGGGAATATAGAGAGCATGCTGTCGGTAGAAATGGGCTTGAAAGAGCTTGCTTCCCTTAAGGTCGAGGAAGCTATTGTTCTTGCAC TGGCTCAGCAGCGGCGTGCAAATTCTGCCCGGCAGTCAATCTCAGAGCTGAAATCACCGGGCGATCCAAAATACATGGAGGCATTCGAACTTAGTCCGGA GGAGTCTGAAGATGTGCTATTCAAGGAGGCTTGGCTAACGTACTTCTGGGGAAGAGCTAAAGCAAATGGTGTGGAGGAGGAAATCGCAAAAGAGCGACTT CAGTTTTGGATCAACCGTAGCAGGCACTCGCCCAGTTCGCACGATGCTGTTGATGTCGGGGTTGAGAGTGGGTGCAGTGGAACAAGGTCTAATGGAGCTG AGGAAGTTGGGGTTGGAGCATCGGCTGTGGGAAGCATCACGGAGAGGATTAGAGGAATAACCAGTCATGGACACGGTTATCTTTCCTTGTTGAAGGAGAG AATTCAGAAGAAAGGAGAGGCAATAATGAGTGAGTGA
AA sequence Show only first row Show all	>Lus10002574 pacid=23160145 polypeptide=Lus10002574 locus=Lus10002574.g ID=Lus10002574.BGIv1.0 annot-version=v1.0 MNSRSRTQSPVYARRQWGSDSSAAAMATATTSPSILPAHHHARSSSASGLSAIKRNQNYAAKAAAQRLAQVMASQTADDDDDDEDNPDDLGFRYSVPPPP PLSLSRTAATRIARSPSPAATIPLKLAEETPSVRSTSAGRPAMSYRAAAPPPAKGSLRTAVSLPPLEPPKNGFRDGKRFPSDEGYPNSKDSGDYHEASEL RDELDMLQEDNDSMVEKLRLEEERCQEAEDRVRELEKQVASLGEGVSLEAKLLSRKEAALRQREAALKDAKQDSVDKEIASVRSDVQNAKDEASVVLRQL HGAESEVNALRSMTQRMVLTQKEMEEVVLKRCWLARYWGLAAKYGICSDVAVPKHEYWSSLAPLPFEVVLSAGQKAKEERWEKGDAGDKERRNKLAQDLN ELTGEGNIESMLSVEMGLKELASLKVEEAIVLALAQQRRANSARQSISELKSPGDPKYMEAFELSPEESEDVLFKEAWLTYFWGRAKANGVEEEIAKERL QFWINRSRHSPSSHDAVDVGVESGCSGTRSNGAEEVGVGASAVGSITERIRGITSHGHGYLSLLKERIQKKGEAIMSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13260			unknown protein		Lus10002574 [exp]	0	1
AT5G13260			unknown protein		Lus10001801 [exp]	1.4	0.8763
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	3.0	0.8432
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	3.7	0.8433
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	7.5	0.8089
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	9.6	0.8080
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10000521 [exp]	9.8	0.7627
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	10.2	0.7957
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	10.4	0.8321
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	11.4	0.8164
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034868 [exp]	11.6	0.7866

Compare expression of checked genes

Lus10002574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.