Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13250 89 / 3e-19 RING finger protein (.1) AT1G28080 84 / 7e-18 RING finger protein (.1) AT2G30580 49 / 5e-06 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT3G23060 48 / 1e-05 RING/U-box superfamily protein (.1) AT1G06770 45 / 6e-05 DRIP1 DREB2A-interacting protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001802 [exp] 328 / 1e-110 AT5G13250 66 / 9e-12 RING finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G062700 [exp] 96 / 1e-21 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 91 / 5e-20 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.013G042000 [exp] 51 / 8e-07 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.004G137200 [exp] 50 / 1e-06 AT5G13250 92 / 9e-21 RING finger protein (.1) Potri.005G219000 [exp] 46 / 4e-05 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 45 / 4e-05 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 44 / 0.0002 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002575 pacid=23160134 polypeptide=Lus10002575 locus=Lus10002575.g ID=Lus10002575.BGIv1.0 annot-version=v1.0 ATGAGGATGCTCCGTACTCCCTTGTCTACTACTCCAATCTCCAAACGACAGCATATCACTGGCCGCCTTCGTCTTCGGGAGGAGCTGGGTACCACAAGTA GCGATCGTCACAATATTAATATTTATGAGGAATGCCCCGGAAGTTGCGTAATATTACCAGAAAACCCGGGCGGATCAGTCGGAAGTTATTATTATAAGAG TAGTAGTAGTACTACTGAGATTGATATGGAACTAGTGGGAGCAGGTGGTAACAACAGCAGCAGCAGCAACCAGCTGAATAATAATAACGACAATGAAGAA GAAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGGAGAAGGTGAAGTAGTGGGGTCTACTAATGATGAAGAAGACGGAGCAGCAGCTTCTTGTTCCGAGA GCTGGTTGCAGTTGAGTATCGGCGGCCAAACACCATCAACCACCCACCAGCGGCGGCGGCCGGATCTGATAGAACTTGATCTGCTTGCCGGCGGAAGCAC TACTAGTACTAGTTGGCCCTTTACTCCTACTCCAACTTTTCTTCCTGAAGGTGGTGAGGGTGTGGCACATATTCCTCCTTCTCCTCACCCCCCGGCCTTG TTTTTGCAGCAGCAGGGTCCCACCTCACTACTCCAGCTGACCGCCGGAGCTGCTGCTTCTGCGGCCGGAGGAGTCTTGTTTACCTCGACTCCGTCGTCGG ATAATATTATTAACCACTGGCCCTCTTACATGAGGCCGCCGGGAGTAGTGACTTGTACTGAAGCACCATCATCGATGCATCAATATCATCATCATCACAA TTATCTTCAAAATTATTCAATGGTGGGGGTGGGTCCAAATTATTATTCCAGCAGGCCATTTCAATTCCAATATAATTCCAGTAGCGGCGGCAGATCAGAT CCTAATGACAACCCCGACGACTTTAGAGTAATTGATGCCCCCAAGCGACCTCATTCCGGCCTTTGGTTCTTCCTTCAACCCTCCTCCCAATCGAAAGAGC AATTAATGTTGCCTCCTTTACCAAAGAGCTACCTCCGTATCAAGGATGGAAGAATGACTGTCAGGTTGTTAATCAACTATCTTGTTTCCAAGCTCTGTTC GGATATTCATTCTCTGGATGAGGTAATTCTTCGTTTCTCTTCTTCTTCTTCTTCTTCTTGCATCCTTACAGCTGGCCTTCATTCTTAG
AA sequence Show only first row Show all	>Lus10002575 pacid=23160134 polypeptide=Lus10002575 locus=Lus10002575.g ID=Lus10002575.BGIv1.0 annot-version=v1.0 MRMLRTPLSTTPISKRQHITGRLRLREELGTTSSDRHNINIYEECPGSCVILPENPGGSVGSYYYKSSSSTTEIDMELVGAGGNNSSSSNQLNNNNDNEE EEEEEEEEEEEGEGEVVGSTNDEEDGAAASCSESWLQLSIGGQTPSTTHQRRRPDLIELDLLAGGSTTSTSWPFTPTPTFLPEGGEGVAHIPPSPHPPAL FLQQQGPTSLLQLTAGAAASAAGGVLFTSTPSSDNIINHWPSYMRPPGVVTCTEAPSSMHQYHHHHNYLQNYSMVGVGPNYYSSRPFQFQYNSSSGGRSD PNDNPDDFRVIDAPKRPHSGLWFFLQPSSQSKEQLMLPPLPKSYLRIKDGRMTVRLLINYLVSKLCSDIHSLDEVILRFSSSSSSSCILTAGLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	0	1
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	1.0	0.9858
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	2.4	0.9357
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10042632 [exp]	4.8	0.9112
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	7.9	0.8903
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	13.0	0.9316
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	13.2	0.9291
AT2G40070			unknown protein		Lus10030402 [exp]	14.4	0.8704
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	17.0	0.8744
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	17.8	0.9285
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	19.0	0.9306

Compare expression of checked genes

Lus10002575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.