Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21090 242 / 2e-81 Leucine-rich repeat (LRR) family protein (.1) AT3G43740 233 / 4e-78 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G71830 195 / 9e-59 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 192 / 1e-57 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 179 / 7e-53 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 167 / 1e-48 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 157 / 9e-45 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G10290 102 / 5e-25 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G60800 100 / 1e-24 NIK3 NSP-interacting kinase 3 (.1) AT1G31420 99 / 9e-24 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001807 [exp] 298 / 1e-103 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10002117 [exp] 214 / 1e-70 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013902 [exp] 216 / 1e-64 AT1G49870 454 / 2e-145 unknown protein Lus10026751 [exp] 186 / 5e-60 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10020962 [exp] 183 / 3e-54 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10028716 [exp] 179 / 5e-53 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10042755 [exp] 159 / 9e-49 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 155 / 3e-47 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10006057 [exp] 120 / 2e-31 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061600 [exp] 311 / 8e-109 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.003G166200 [exp] 298 / 2e-103 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.009G018800 [exp] 237 / 1e-79 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 224 / 1e-74 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.001G296500 [exp] 221 / 2e-73 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 213 / 5e-70 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.003G023000 [exp] 187 / 6e-56 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.005G083300 [exp] 187 / 1e-55 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 186 / 2e-55 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 184 / 1e-54 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002579 pacid=23160146 polypeptide=Lus10002579 locus=Lus10002579.g ID=Lus10002579.BGIv1.0 annot-version=v1.0 ATGGCTATCTGCACTTTCTTCAATCTCCTTCTCCTAACTCTATCTATCATCGTAGCTCCTGCAACATCAAACCTCGAAGGGGATGCTCTGTACGCGCTGA GACTAGCAGTGAAGGACCCTGGACTTGTTCTCCAGAGCTGGGATCCAACCTTGGTTGACCCTTGCACTTGGTTTCACGTCACCTGCGATTCCTATGGCCG CATTACCCGACTGGACCTTGGGAATGCTAGGCTGTCTGGAAGGCTAGTCCCAGAGCTTGGCAAGTTGGAGCACCTTCAGTATCTGGAGTTGTATATGAAC GAGATAGTAGGGCCGATTCCAAAGGAGCTAGGAAACCTCAAGAATCTTATCAGCTTGGATCTCTACCACAACAACCTTACTTCATCAATCCCCCCTTCCC TCTCAAATCTCTCTAACCTCAAGTTCTTACGGCTGAATGGTAACAGATTGACAGGAAGGATTCCCAGGCAGCTTACCAAGCTTCCAAGCCTCAAGATACT TGATGTATCCAACAACGACTTGTGTGGCACAATCCCCACTTCTGGCTCCTTCTCCAAGCTCACCGAGGAAAGTTTTATGAACAACCCAAGACTAGAAGGC CCTGAGCTCATGGGGTTTGTGAGGTATGATGCTGGAGGTTACTGTAAATGA
AA sequence Show only first row Show all	>Lus10002579 pacid=23160146 polypeptide=Lus10002579 locus=Lus10002579.g ID=Lus10002579.BGIv1.0 annot-version=v1.0 MAICTFFNLLLLTLSIIVAPATSNLEGDALYALRLAVKDPGLVLQSWDPTLVDPCTWFHVTCDSYGRITRLDLGNARLSGRLVPELGKLEHLQYLELYMN EIVGPIPKELGNLKNLISLDLYHNNLTSSIPPSLSNLSNLKFLRLNGNRLTGRIPRQLTKLPSLKILDVSNNDLCGTIPTSGSFSKLTEESFMNNPRLEG PELMGFVRYDAGGYCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	0	1
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	4.7	0.8426
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	6.0	0.8387
AT2G19090			Protein of unknown function (D...		Lus10015534 [exp]	6.9	0.8198
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	9.2	0.8377
AT5G01910			unknown protein		Lus10025214 [exp]	10.2	0.7757
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	13.0	0.8113
AT1G11915			unknown protein		Lus10038443 [exp]	13.2	0.8037
AT1G03270			CBS domain-containing protein ...		Lus10028010 [exp]	14.0	0.6917
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	15.3	0.8103
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	19.3	0.7901

Compare expression of checked genes

Lus10002579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.