Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 421 / 1e-139 hydroxyproline-rich glycoprotein family protein (.1) AT5G41100 295 / 1e-91 unknown protein AT3G26910 280 / 2e-85 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001808 [exp] 966 / 0 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1) Lus10032001 [exp] 369 / 2e-119 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1) Lus10035172 [exp] 329 / 6e-104 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166300 [exp] 513 / 3e-175 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 503 / 2e-171 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.017G063000 [exp] 428 / 1e-141 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G324800 [exp] 405 / 3e-133 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain
Representative CDS sequence Show only first row Show all	>Lus10002580 pacid=23160131 polypeptide=Lus10002580 locus=Lus10002580.g ID=Lus10002580.BGIv1.0 annot-version=v1.0 ATGAAGACTTCGCTCAGGAGACTACGAGGCCTCACAATTAACAAGTATAATCACAACAATAATCACGACGATGGAGACGTAGGACGACATCTCCGCTCCT TGGCTCAATTGGACGAGCTAGCTCGCGCTACTCAGGATATGCAGGACATGAGAGAGTGTTACGATGGCCTACTCTCTGCTGCTGCCGCTACAGCTAATAG TGCCTATGAATTCTCGGAGTCATTGCGGGAAATGGGAGCTTGCCTTCTGGAGAAAACTGCATTGAACGATGACGAGGAAAGTGGTAAAATATTGTTGATG CTAGGGAAAGTGCAGTTTGAGCTGCAGAAACTTGTTGATGCCTATCGTTCCCATGTATTCAAAACAATCACTGTGCCGTCGGATTCTCTTCTCAATGAGC TTCAAACAGTTGAGGAAATGAAGGAGCAGTGCGATGACAAAAGAGAAATGTACGAGTATATGAGAACCAGGCGGAGGGAAAAAGGGAGAGGAAGTAACAT AAAAGGAGAGGAGAGCTTCTCCGTGGACCAAGTACAATCAGCACGGGATCAGTATGATGAGGAAGCAACACTGTTCGTCTTTCGTTTGAAGTCCCTGAAG GAAGGACAGTCTCGTAGTCTTCTTACTCAGGCCGCAAGGCACCATGCTGCTCAGATGTCCTTCTTCAAGAAGGCTCTTAAAGCTCTTGAAGACGTTGAAC CACATGTGAAATCTGTCACTGAACAACGGTTCATTAACTACCACTTTGATGGCCTTGATGAGGATGATGGTGAGGACGATGATGACAGCAATACCAATGT CACTAACGACGATGGTGAGCTGAGTTTCCAGCATGATCAAAACGATGACGGTGATGTTTCCACTTCAAGTGACTCGATGGAGTTGGATGTTGAAGAGATC ACCTTTCCCAAAATTTCAAATTCATCATCCACAAAGGTAAATCCTGGTAAAAGCTACAGGTCATTTTCCTTCAGAGGAGACATTAGAGCACTCAGTCAAT CAGCTCCACTTTATGCTGTAAGGAAATCTGCTTCAGTTGACAAGATGGAACAATTGCGGCCATCATTTGCCAAAAAGTTCAATTCCTACGTCCTCCCAAC TCCAGGTGATTCCAAGGGTACAAGCTCCACACTTTTCAGCGGTCCGATTACTCCAACATTCAAAGGAAATGTAAGCGGGCGTTGGTCACAGTCAAACTTC CAGGAATCCAAGAATCACGAAAAGCTTTTGAGAGATGAGAAACTAACATCACAGTCAGTACTGAGAGAGAGCAACAATAGATCTCCGACCACACGCTTAA CTCCTCCTCCACCAATGGCGGATAGGCTGCTACTTTCAAGGCTTGACCCGGTTAGCGGGATCTCTGACTACAACAAGAAGATCAAAAGACAAGCCTTTTC AGGACCCATTGCAAGGAAATCTTGGTCCTCCATCCCTTCTTCATTGGAGAAAGCTCAGGGGCTATCTGGACCTCTTTTGCAGCAGCAGACCCACCGAATG GCTCATCAAATGCAATCGTCCTCTCCGAGGGTGTCGCCAAGTAACTCCCCAACTATACTGTCTTCGCCTAGAATAAGCGAACTTCATGAACTTCCCAGAC CTCCTCCATCCAGGAATATCAGACCTTGGAGCTTTGGAGGAGTTGGACACTCAGCTCCATTGTTTCCCAAAGTTCAAATGCAGCGTTCTTCTGCTACTGC TGCTACTCCTCTACCAATCCCTTCTCAGGTGTCTCGCAGTTTGTCGATACCATCTTCGGGCCAAAGGTCATTGAATGCAGTGTCGCCTCCTCCCCCTGCA ACTGAAAGTCCAGACAAGATGGTTGAAGAGTTTTTCTCCCCTCCTCTTACACCAATTTCTGCACTAATGGCTGCAGATTCTTTTCAGACCAGTAATAGAG TGAAAAATGATAAGTCTTAG
AA sequence Show only first row Show all	>Lus10002580 pacid=23160131 polypeptide=Lus10002580 locus=Lus10002580.g ID=Lus10002580.BGIv1.0 annot-version=v1.0 MKTSLRRLRGLTINKYNHNNNHDDGDVGRHLRSLAQLDELARATQDMQDMRECYDGLLSAAAATANSAYEFSESLREMGACLLEKTALNDDEESGKILLM LGKVQFELQKLVDAYRSHVFKTITVPSDSLLNELQTVEEMKEQCDDKREMYEYMRTRRREKGRGSNIKGEESFSVDQVQSARDQYDEEATLFVFRLKSLK EGQSRSLLTQAARHHAAQMSFFKKALKALEDVEPHVKSVTEQRFINYHFDGLDEDDGEDDDDSNTNVTNDDGELSFQHDQNDDGDVSTSSDSMELDVEEI TFPKISNSSSTKVNPGKSYRSFSFRGDIRALSQSAPLYAVRKSASVDKMEQLRPSFAKKFNSYVLPTPGDSKGTSSTLFSGPITPTFKGNVSGRWSQSNF QESKNHEKLLRDEKLTSQSVLRESNNRSPTTRLTPPPPMADRLLLSRLDPVSGISDYNKKIKRQAFSGPIARKSWSSIPSSLEKAQGLSGPLLQQQTHRM AHQMQSSSPRVSPSNSPTILSSPRISELHELPRPPPSRNIRPWSFGGVGHSAPLFPKVQMQRSSATAATPLPIPSQVSRSLSIPSSGQRSLNAVSPPPPA TESPDKMVEEFFSPPLTPISALMAADSFQTSNRVKNDKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	0	1
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	8.8	0.6378
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10004497 [exp]	13.0	0.6329
					Lus10024691 [exp]	13.7	0.6617
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	17.0	0.6463
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	20.9	0.6011
AT5G61120			unknown protein		Lus10030998 [exp]	24.8	0.6454
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10022741 [exp]	38.4	0.6129
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	72.7	0.5796
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	91.2	0.5708
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	97.5	0.5293

Compare expression of checked genes

Lus10002580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.