Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13180 271 / 8e-92 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 263 / 1e-88 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT3G04070 189 / 2e-58 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 181 / 1e-56 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 182 / 1e-55 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 179 / 7e-55 NAC ANAC025 NAC domain containing protein 25 (.1) AT4G27410 178 / 8e-55 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G77450 173 / 1e-53 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G65910 180 / 1e-52 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G61430 172 / 3e-52 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001809 [exp] 454 / 2e-164 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10011215 [exp] 188 / 5e-58 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10037156 [exp] 185 / 1e-57 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10036773 [exp] 185 / 1e-57 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10030446 [exp] 185 / 1e-57 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026496 [exp] 186 / 3e-57 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10018469 [exp] 186 / 5e-57 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10023179 [exp] 185 / 6e-57 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015076 [exp] 185 / 6e-57 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061200 [exp] 329 / 1e-114 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 325 / 5e-113 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 251 / 4e-84 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 248 / 6e-83 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.011G046700 [exp] 191 / 3e-59 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 189 / 2e-58 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 184 / 3e-57 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.019G031400 [exp] 185 / 9e-57 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.011G123500 [exp] 182 / 8e-56 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 182 / 8e-56 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10002581 pacid=23160136 polypeptide=Lus10002581 locus=Lus10002581.g ID=Lus10002581.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGAGCTTTGTCAAGAATGGTGTGCTGAGACTGCCACCTGGCTTCAGATTCCACCCAACCGACGAGGAGCTCGTGGTTCAATACCTCAAAC GGAAAGTCTATTCTTTTCCTTTACCCGCTTCCATCATTCCCGAAGTCGATGTCTGCAAGTCTGATCCTTGGGATTTACCTGGTGATTTGGAGCAAGAGAG GTACTTTTTCAGTACCAAGGAGGCCAAATATCCCAATGGGAACCGTTCCAATAGAGCTACTGGGTCAGGCTACTGGAAGGCAACAGGGATCGACAAGCAA ATTGTGGCTGCTTCTTCTAAAACTGTTGTTGGGATGAAGAAAACTCTGGTTTTTTATAGAGGAAAACCCCCACATGGAGGTAGAACTGATTGGGTCATGC ATGAGTACCGCTTCCTTCCTTCTCCTTCTGATGCTCCCAACCAGCAGATGGAGAATTGGGTTCTTTGCCGGATATTTTTGAAGAAGAGAGGTTCCAAGAA TGAGGATGATGCCGGATGCTGCATTAAGCAGCAGCTTGGTTCTTCTAACCAGACTGTGACCAGGCATGTCAAGCCAGCTTTGACCAGAAAGCCAGTGTTC TACGACTTCATGACAAAGGGGGGAACAGAGGTTTCATCATCAGGATCAAGTGGGATCACAGATGATGTTTCCAATAATGAAACAGACGAGCATGAGGAAA ATAGCAGCAGCGGCAACACTTCTTCTTTCCCTCATTTCAGGAGAAAACCATAG
AA sequence Show only first row Show all	>Lus10002581 pacid=23160136 polypeptide=Lus10002581 locus=Lus10002581.g ID=Lus10002581.BGIv1.0 annot-version=v1.0 MEKMSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVYSFPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATGSGYWKATGIDKQ IVAASSKTVVGMKKTLVFYRGKPPHGGRTDWVMHEYRFLPSPSDAPNQQMENWVLCRIFLKKRGSKNEDDAGCCIKQQLGSSNQTVTRHVKPALTRKPVF YDFMTKGGTEVSSSGSSGITDDVSNNETDEHEENSSSGNTSSFPHFRRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	0	1
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	1.0	0.9110
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	4.5	0.8849
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	4.5	0.8986
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	4.9	0.8973
AT1G31940			unknown protein		Lus10012117 [exp]	5.2	0.8973
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	7.3	0.8570
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	8.8	0.8904
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	9.2	0.8737
AT4G29960			unknown protein		Lus10001629 [exp]	14.4	0.8884
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	15.3	0.8581

Compare expression of checked genes

Lus10002581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.