Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43300 440 / 2e-154 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) AT3G02040 423 / 4e-148 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 419 / 2e-146 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011337 [exp] 664 / 0 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10012556 [exp] 453 / 2e-159 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10035175 [exp] 442 / 3e-155 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10032006 [exp] 441 / 8e-155 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10041535 [exp] 175 / 1e-53 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061100 [exp] 491 / 1e-174 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.017G063500 [exp] 462 / 5e-163 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G325200 [exp] 461 / 7e-163 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10002582 pacid=23160141 polypeptide=Lus10002582 locus=Lus10002582.g ID=Lus10002582.BGIv1.0 annot-version=v1.0 ATGGCTGTTAAAGCCGTTCATGTCGCCGACGTTCCTCATCCAAATCTCGACCGCCAACTCCTCTCAGCCGAGAATGCCGTTTATCAAGAAGAAGAAGAGG CAACGAAGGTGGGAAATTGTTACGAGTTTCCGAAATTCGTAGTGATGGGACACAGGGGAAGCGGGATGAACATGCTGCAGTCATCCGACCCGAGGATGAA ATCCATTAAAGAGAACACTCTGCTTTCCTTCAACTCTGCTTCCGATTTGCCTCTAGATTTCATCGAATTCGACGTTCAGGTGACAAAAGATGACTGTCCT GTCATTTTCCACGACAACTTCATCTTCACCCAACACCAGGGTGTTATTGTCGAAAACAGAGTCACAGACCTGACACTAGACGAATTCCTATCGTACGGCC CACAAAGAGACGACATAGATGGGGGTAATTTGGTGACAAAGCCGTTGTACAGGAAAATGAAAGACGGAAGGGTGTTCGAATGGAAGGTTGAGCAAGACGA TTGCTTCTGCACTTTGGCAGAAGCGTTGGAGAAAGTTAAAAGCTCGATTGGGTTCAACGTCGAGCTGAAATTCGACGACCACCTTGTCTACACTAAACAA CAACTCACCCACGTCCTGCATTCCATCCTCAAGGTGGTTTTCGATCATGCGAAGGACAGACCCGTCATTTTCTCCACCTTCCATCCTGATGCTGCTCAGC TGATGCGGAAATTGCAGGACAAGTATCCCGTTTTTTTCCTGACGAATGGCGGATCGGAGATTTACATGGACATCAGGAGGAATTCGTTAGACGAGGCGAT TAAGGTGTGTAAAGAAGGTGGATTGCAAGGAATCGTGTCGGAAGTGAAAGCTATATTCAGGAATCCTGGAGCTATCTCTAGAATCAAAGATTCCAAGCTT TGCCTTGTCACATATGGCCAATTGAACAACGTGGGGGAAGTTGTGTACATGCAACACTTGATGGGAGTTGAAGGAGTGATCGTTGACCTGGTGGGTGAGA TTACCAAAGCTGTAGCTGAGGAGGAAGATTGTAAAGACAAAGGGGTTGACCAGATTAGGATGTTTCAGCTCAAGACAGAGGCTCCTCAGTTTTCACGAGA CGAGTTGTCGTTCCTTCTCAACTTGATTCCTCAGCTTATGGTTTAA
AA sequence Show only first row Show all	>Lus10002582 pacid=23160141 polypeptide=Lus10002582 locus=Lus10002582.g ID=Lus10002582.BGIv1.0 annot-version=v1.0 MAVKAVHVADVPHPNLDRQLLSAENAVYQEEEEATKVGNCYEFPKFVVMGHRGSGMNMLQSSDPRMKSIKENTLLSFNSASDLPLDFIEFDVQVTKDDCP VIFHDNFIFTQHQGVIVENRVTDLTLDEFLSYGPQRDDIDGGNLVTKPLYRKMKDGRVFEWKVEQDDCFCTLAEALEKVKSSIGFNVELKFDDHLVYTKQ QLTHVLHSILKVVFDHAKDRPVIFSTFHPDAAQLMRKLQDKYPVFFLTNGGSEIYMDIRRNSLDEAIKVCKEGGLQGIVSEVKAIFRNPGAISRIKDSKL CLVTYGQLNNVGEVVYMQHLMGVEGVIVDLVGEITKAVAEEEDCKDKGVDQIRMFQLKTEAPQFSRDELSFLLNLIPQLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43300		AtGDPD3	glycerophosphodiester phosphod...		Lus10002582 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	28.1	0.8264
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	48.6	0.8019
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	90.1	0.7790
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024049 [exp]	156.1	0.7578
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	157.0	0.7659
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	215.9	0.7498

Compare expression of checked genes

Lus10002582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.