Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43280 399 / 1e-141 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 114 / 8e-30 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 93 / 3e-22 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT1G60550 72 / 3e-14 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT2G30650 69 / 4e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 68 / 1e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 67 / 2e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 66 / 2e-12 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT1G06550 64 / 3e-11 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G29010 61 / 4e-10 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011336 [exp] 542 / 0 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10010994 [exp] 110 / 5e-28 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10016920 [exp] 90 / 5e-21 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10006501 [exp] 85 / 1e-18 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 85 / 4e-18 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10037777 [exp] 78 / 5e-16 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10016919 [exp] 74 / 8e-16 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10013023 [exp] 73 / 2e-14 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10029142 [exp] 72 / 5e-14 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061000 [exp] 432 / 1e-154 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G166700 [exp] 172 / 4e-53 AT5G43280 136 / 4e-40 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G153300 [exp] 115 / 4e-30 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.008G104500 [exp] 100 / 6e-25 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 97 / 9e-24 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.003G080800 [exp] 93 / 4e-22 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.008G220400 [exp] 86 / 7e-19 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 83 / 1e-17 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.018G004100 [exp] 74 / 8e-15 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 73 / 1e-14 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10002583 pacid=23160144 polypeptide=Lus10002583 locus=Lus10002583.g ID=Lus10002583.BGIv1.0 annot-version=v1.0 ATGGAGTCAAAATACCAATCCCTAGCAATCGACCGGAAATCCCCAAACTCATCCGTCATCCATCTCTACCTCAATCGCCCATCGCAGCTCAACGCTCTAT CTCGCGAATTCTTCGCGGAATTCCCCAAAGCCCTCGATTTACTGGATCAAAACCCCAGCGTCAGCGTCATCGTGCTCTCCGGCGCCGGCGACCACTTCTG TTCCGGAATCGATCTCAAAACCTTCGCTTCCATACAAAGCAAGACCGGATCTTTGCCTCCCGGCCGTGCCAACGAGTACCTCCGGCGTGACATCAAGTTC TTGCAGGAGGCTATCACGGCGATCGAGCGGTGTCGGAAGCCGGTGATCGCCTCAATCCGAGGGGCCTGTATCGGCGGGGCGATCGATATAGTGACCGCCT GTGATATACGGTATTGTACAACGGACGCTTTTTTCTCGGTGAAAGAGGTTGATTTAGCCATTACTGCTGATTTAGGGACGCTTCAGAGACTCCCTGGGAT TCTTGGGTATGGAAATGCGATGGAATTGGCTTTATCGGGTCGGAGATTCTCGGGTCAGGAGGCGAAAGAGCTGGGTCTGGTTTCCAGGGCTTTCGGCTCT AAAGAGGAATTGGATGAAGGTGTAAACATTGTAGCAGAAGGAATCGCTGCAAAGTCACCACTTGCTGTAATTGGAACAAAAGCTGTGCTTTTGAAGAGCA GGGATTTGAGTGTGGATCAAGGATTGGACTATGTAGCAACTTGGAACTCTGCAATGCTTATGTCTGATGACTTGATAGAAGCTGTATCTGCTCAAATGAA GAAAAGGAAGCCTGTGTTTGCTAAACTCTGA
AA sequence Show only first row Show all	>Lus10002583 pacid=23160144 polypeptide=Lus10002583 locus=Lus10002583.g ID=Lus10002583.BGIv1.0 annot-version=v1.0 MESKYQSLAIDRKSPNSSVIHLYLNRPSQLNALSREFFAEFPKALDLLDQNPSVSVIVLSGAGDHFCSGIDLKTFASIQSKTGSLPPGRANEYLRRDIKF LQEAITAIERCRKPVIASIRGACIGGAIDIVTACDIRYCTTDAFFSVKEVDLAITADLGTLQRLPGILGYGNAMELALSGRRFSGQEAKELGLVSRAFGS KEELDEGVNIVAEGIAAKSPLAVIGTKAVLLKSRDLSVDQGLDYVATWNSAMLMSDDLIEAVSAQMKKRKPVFAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	0	1
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	3.2	0.8785
AT1G26920			unknown protein		Lus10030488 [exp]	4.7	0.8324
AT4G17250			unknown protein		Lus10008508 [exp]	4.9	0.8680
AT5G11680			unknown protein		Lus10027000 [exp]	5.2	0.8914
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	6.2	0.8525
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	6.5	0.8351
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	6.8	0.8322
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	8.0	0.8634
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	8.2	0.8249
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	8.8	0.8604

Compare expression of checked genes

Lus10002583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.