Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61620 402 / 6e-142 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018409 [exp] 539 / 0 AT1G61620 459 / 3e-164 phosphoinositide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040000 [exp] 456 / 4e-163 AT1G61620 462 / 2e-165 phosphoinositide binding (.1) Potri.004G026800 [exp] 447 / 1e-159 AT1G61620 461 / 4e-165 phosphoinositide binding (.1) Potri.003G148300 [exp] 42 / 0.0003 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 41 / 0.0004 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04641 [flax] [poplar] Rtf2 Rtf2 RING-finger
Representative CDS sequence Show only first row Show all	>Lus10002584 pacid=23177081 polypeptide=Lus10002584 locus=Lus10002584.g ID=Lus10002584.BGIv1.0 annot-version=v1.0 ATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTCACCTACGATGAGAAGCGGAAGCTGGGTTACGGCACGCAGAGGGAGAGGCTTGGAA AGGACTCGATCAAGCCCTTCGATTCCTGCAGCCTTTGCTTGAAGCCCTTCATCAGTCCCATGTCCTGCCCAAAGGGTCACGTCTTCTGTAAAGAATGCAT CCTCGAGTGTATCCTAGCACAGAAGAAGGACATCCAGCGGAAGCTAGCAGCGCATGAACTACAAACAAAGCAAGAGAAAGAAGAAGAAGAAGAGAAAGCA GCAGCACAGAGAGCCAGAGAACTCGAAGCATTCGACCAGCAGAACCACGGAGCAGTCCCACAGTACACGAACGACCGAAACCAAAGCCAAGACAACAACA ACTTCCACGGAGCCAACTCCGTGAAAGCAACCTTGTACGAAGAAGAAGCTCTCCGTACAATGAAAGCCTTCTGGCTACCATCCGCCACTCCAGGAGCCGC CGTGAAACTAACAGCTCCTTCCTTACACACAACCTGCCCTGAAGGATCGGAGAAGCTGACAATGAAGAGTTTGTTCCCCGTTCATATGACTGAGGATACG AGCGAAGGGAAATCCGGACATCTGGACAAGAAGTATCTTTGTCCTAGCTGTAAGGTTACGTTGACGAACACGGTGACGCTTGTGGCTTTAAGCTCGTGCG GGCACGTGTTCTGCAAGAAGTGTGCCGATAAGTTCGTGGCGGTCGATAAGGTCTGCCTGGTGTGTAGTAAAGGGTGTAAGGGGAAGAATCTGGTGCAGCT GGAGAAAGGCGGGACTGGGTTTGCTGGGCATGATGATCATCTTGTGGCGAGTGATTTTAAGCATTTGGGAAGTGGGTCTGGTTTGGGACTTGTTAGGCCT TCTTCTAAGGTTTGA
AA sequence Show only first row Show all	>Lus10002584 pacid=23177081 polypeptide=Lus10002584 locus=Lus10002584.g ID=Lus10002584.BGIv1.0 annot-version=v1.0 MPQRHSKNNNDLAFFTYDEKRKLGYGTQRERLGKDSIKPFDSCSLCLKPFISPMSCPKGHVFCKECILECILAQKKDIQRKLAAHELQTKQEKEEEEEKA AAQRARELEAFDQQNHGAVPQYTNDRNQSQDNNNFHGANSVKATLYEEEALRTMKAFWLPSATPGAAVKLTAPSLHTTCPEGSEKLTMKSLFPVHMTEDT SEGKSGHLDKKYLCPSCKVTLTNTVTLVALSSCGHVFCKKCADKFVAVDKVCLVCSKGCKGKNLVQLEKGGTGFAGHDDHLVASDFKHLGSGSGLGLVRP SSKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	0	1
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	2.0	0.9214
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	2.8	0.9143
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	3.7	0.8884
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	4.5	0.8923
AT5G13340			unknown protein		Lus10035960 [exp]	4.9	0.8908
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	6.9	0.8932
AT4G27380			unknown protein		Lus10037879 [exp]	9.5	0.8478
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	9.6	0.8998
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	11.2	0.8759
AT4G32930			unknown protein		Lus10005503 [exp]	12.3	0.8792

Compare expression of checked genes

Lus10002584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.