Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11380 261 / 4e-88 PLAC8 family protein (.1) AT5G05350 66 / 2e-12 PLAC8 family protein (.1) AT3G10980 57 / 3e-09 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT2G40935 51 / 8e-08 PLAC8 family protein (.1.2.3) AT1G52200 49 / 3e-07 PLAC8 family protein (.1) AT1G14870 49 / 5e-07 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT5G35525 48 / 9e-07 PLAC8 family protein (.1) AT3G18470 47 / 9e-07 PLAC8 family protein (.1) AT2G45010 47 / 3e-06 PLAC8 family protein (.1.2) AT1G14880 46 / 3e-06 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018410 [exp] 393 / 5e-140 AT1G11380 270 / 1e-91 PLAC8 family protein (.1) Lus10001260 [exp] 66 / 4e-12 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 63 / 3e-11 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10017417 [exp] 58 / 1e-09 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 58 / 2e-09 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10043325 [exp] 55 / 4e-09 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 54 / 1e-08 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 52 / 3e-08 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10005257 [exp] 52 / 4e-08 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040100 [exp] 290 / 3e-99 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.004G026700 [exp] 273 / 1e-92 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.016G129700 [exp] 72 / 3e-14 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.010G182100 [exp] 62 / 7e-11 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.006G024900 [exp] 57 / 1e-09 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.008G075300 [exp] 57 / 3e-09 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.012G092200 [exp] 55 / 5e-09 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 51 / 9e-08 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 49 / 5e-07 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 47 / 3e-06 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10002586 pacid=23177078 polypeptide=Lus10002586 locus=Lus10002586.g ID=Lus10002586.BGIv1.0 annot-version=v1.0 ATGGGGGGATTCTCCGTTGTGGGCGGCGACGACGGGGATAATGGCCGGAATAAGGAGGACGAGGAGGAGAAGCTGATTGAGGAGGCGGCGACGGTGGTGA TTGATTTCAACCTGCTCTGCTCCACTGTGGCTATGCAGACGGAGGGGAAATGGACGAAGCTCGGCCAAGACGAGGAGGAAGGTGCGGAATTTTACGGCGG CGGCGGTGGGGTTTTTAGGATGTGGGAAGGTGGCGTTCTTGATTTCTGCGACGACCGCCGCCTTGCCGTGGAATCGTTCTGCTGTCCATGCTACAGATTC GGGAAGAACATGAGACGGGCTGGTTTCGGATCATGCTTTCTTCAGGCAGCTGTGTACTACATTCTAGCTCTATGTGCTCTCCTCAACATGGTTGCCTTCT TCGTAACCAAGAGGCATTGCTTCGTGTACCTAGCAATCGGGTTTGCAGTCCTGATTGGTATCTACCTAGGGTTCTTCCGGACACAGATTAAGGAGAAGTT CAACATCAGGGGTAGCGAAAGTGCGTTGGACGATTGCTTCTACCATCTTTTGTGTCCACTCTGCGCACTAAGCCAGGAGGCAAGAACATTGGAGATGAAC AATGTGCAGGACGGGACATGGCATGGTCCCGGGGACACGTTATGCCTAGGCCGGTACGGGGAAGGGAACCATTCTTACGCGCAGCTGCACCCTCCTGCCA TTGTCTCGACTGACCAGCAGCATCAGTCCACAGAAGATCAGTAG
AA sequence Show only first row Show all	>Lus10002586 pacid=23177078 polypeptide=Lus10002586 locus=Lus10002586.g ID=Lus10002586.BGIv1.0 annot-version=v1.0 MGGFSVVGGDDGDNGRNKEDEEEKLIEEAATVVIDFNLLCSTVAMQTEGKWTKLGQDEEEGAEFYGGGGGVFRMWEGGVLDFCDDRRLAVESFCCPCYRF GKNMRRAGFGSCFLQAAVYYILALCALLNMVAFFVTKRHCFVYLAIGFAVLIGIYLGFFRTQIKEKFNIRGSESALDDCFYHLLCPLCALSQEARTLEMN NVQDGTWHGPGDTLCLGRYGEGNHSYAQLHPPAIVSTDQQHQSTEDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	1.0	0.9678
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	1.4	0.9626
AT1G74790			catalytics (.1)		Lus10033116 [exp]	2.8	0.9579
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	3.5	0.9544
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	3.5	0.9618
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	4.0	0.9527
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	6.7	0.9450
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	6.7	0.9569
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	7.1	0.9526
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	7.3	0.9526

Compare expression of checked genes

Lus10002586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.