Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 166 / 1e-49 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 108 / 2e-27 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 99 / 8e-24 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 94 / 4e-22 CYCD4;2 cyclin d4;2 (.1) AT4G34160 88 / 2e-19 CYCD3;1 CYCLIN D3;1 (.1) AT2G22490 82 / 1e-17 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G67260 80 / 1e-16 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 68 / 1e-12 CYCD3;3 CYCLIN D3;3 (.1) AT4G37630 64 / 1e-11 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 58 / 2e-09 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018411 [exp] 509 / 0 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10039738 [exp] 177 / 3e-53 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 164 / 2e-48 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 140 / 6e-39 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018520 [exp] 116 / 2e-30 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10010709 [exp] 103 / 2e-25 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 102 / 6e-25 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10019825 [exp] 82 / 2e-17 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 79 / 1e-16 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032100 [exp] 239 / 5e-78 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040900 [exp] 237 / 3e-77 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.011G040500 [exp] 227 / 7e-74 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.019G118600 [exp] 186 / 5e-57 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 174 / 7e-53 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.002G103500 [exp] 106 / 2e-26 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 101 / 7e-25 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 101 / 8e-25 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 100 / 1e-24 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.007G055300 [exp] 99 / 8e-24 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002587 pacid=23177085 polypeptide=Lus10002587 locus=Lus10002587.g ID=Lus10002587.BGIv1.0 annot-version=v1.0 ATGGAGTTCGATCTTTTCAACCCATTGATCAGCTCGGCCGAACCTAAGGAACCCACCAAACCGATCCTTGCCCTGTTCTCTTCAGAGTCTGATCACATGA CTTCTTCCTACTCCTCTGCCCCTTACGCCTCGTTTCGAAAAGAAGCAATCTTCACTCTCGAATCCGTTTCGAAAGCGGATTCCGCAGACCCCTTTGTCCC TTACTTGGCTGTAAACTACATGGATCGCTTCGCCTCGGAGCTTCCATCGTCCATGGAGGGTAGGCCTTGGGTTTTGCCCCTTGTTGCTGTCTCTTGCCTC TCATTGGCTGCGAAAATGAGGAATTTCGAATTTTCCGTCTCGAAATTTCAGCAGAATGTAGTTTCCTTTGACGAGAAGACAGTGAACAGGATGGAAGCAT TGATTCTCGATGCACTGCATTGGAGGATGAGGTCGATAACGCCGTTCTCTTTCCTTCATTTCTTCTCGTCCATGATCGAACTAAAGGTTTCGACCAGTCC AGTGACAGACCGTGCGACAGAGATTGTCTTCAAGGCACAACATGAAATCAGTCTGCTTGAGTTCAAACCATCTATAGTGGCAGCAGCTGCATCTCTAATA GCATGTCAGGAATTGTTCCCTTTGGAGTTCCTCCCATTACATGGCTCAATATTTGCTTCTAAACTTGTAAATATGGACAATGTGGAGAGATGCATAACCA ATATACAAGACGTGATTTGTGGGGAATCTACTATGGATTCAGAAACTCCATCGAGCATGTTGACCTGGAATTCTGATAATGAGGTGAATAGCCTCGCCTC AAATTCCGCCACCACCTCTTCCAATATGGAGAATACTCCAATAAAACGTCGAAAGATTAATTTTGCCTAG
AA sequence Show only first row Show all	>Lus10002587 pacid=23177085 polypeptide=Lus10002587 locus=Lus10002587.g ID=Lus10002587.BGIv1.0 annot-version=v1.0 MEFDLFNPLISSAEPKEPTKPILALFSSESDHMTSSYSSAPYASFRKEAIFTLESVSKADSADPFVPYLAVNYMDRFASELPSSMEGRPWVLPLVAVSCL SLAAKMRNFEFSVSKFQQNVVSFDEKTVNRMEALILDALHWRMRSITPFSFLHFFSSMIELKVSTSPVTDRATEIVFKAQHEISLLEFKPSIVAAAASLI ACQELFPLEFLPLHGSIFASKLVNMDNVERCITNIQDVICGESTMDSETPSSMLTWNSDNEVNSLASNSATTSSNMENTPIKRRKINFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	0	1
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	1.0	0.9550
					Lus10006808 [exp]	2.0	0.9341
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	2.8	0.8962
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	3.0	0.8989
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	4.7	0.8466
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	5.3	0.8695
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	6.7	0.8715
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	7.7	0.8474
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	8.0	0.8568
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	9.5	0.7988

Compare expression of checked genes

Lus10002587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.