Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05150 283 / 2e-90 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 145 / 2e-37 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 140 / 3e-36 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 137 / 2e-35 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 128 / 1e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 126 / 8e-31 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 125 / 2e-30 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 118 / 4e-30 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G35050 117 / 8e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 115 / 4e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018412 [exp] 789 / 0 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 152 / 7e-41 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 141 / 3e-39 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 142 / 5e-36 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10034643 [exp] 132 / 7e-35 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 134 / 8e-35 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 134 / 3e-33 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 129 / 2e-32 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 127 / 4e-31 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032200 [exp] 404 / 2e-138 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 379 / 2e-128 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 153 / 3e-41 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 151 / 1e-39 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 148 / 2e-39 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 134 / 2e-33 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 133 / 2e-33 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 127 / 6e-31 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.008G186500 [exp] 117 / 1e-30 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 115 / 2e-29 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10002588 pacid=23177090 polypeptide=Lus10002588 locus=Lus10002588.g ID=Lus10002588.BGIv1.0 annot-version=v1.0 ATGTCATCCCACCACCAGACAGACCTGGAATCCGCCGCCACGGACTCGGTCGCGTCCTCCCCACGCTCCGACATCCACGGCGACGCTCCTCCTCGCGTCC GCTTCATGTGCAGCTTCGGCGGCAAGATTCTTCCCCGCCCGCACGACAACCTCCTTCGCTACGTCGGCGGCGAGACACGCATGGTCGCCGTCCACCGATC CACCACCTTCTCCGCCCTCCTCACCAAGCTGTCCAAGATCGCCGGTTTCGCCGCCGTCAACGTGAAATACCAGCTCCCCAACGAGGATCTCGACGCGCTG ATCTCTGTCTCCACCGACGAGGACGTCGAGAACATGATGGACGAGTACGATCGCGTCGCGCTGAATCACAACCCCCGATCGGCTCGGCTCCGGCTGTTCC TCTTCCCCAGCGGCGACCCGGTTTCTCGAACCGGTTCGATCAGCTCGCTTTTGGACGGTTCGACCAATCGGGAGCACTGGTTCTTAGACGCGCTCAATTC GGGTCGGAGCTTGGAGCGCATGAGGTCCGAAGCCTCGTCGATCGTGTCGGAGATGCCTGATTACCTGTTCGGGCTTGAGAACTCGGACGACACCGTTTCA CACGGGAGGGAGCAGAAGCTGCGTCACAAAATGATGTTCAACGACAGCGTTTCGGCTTCCGATCCTGGTTCGCCGGCGCCGGTTATTTCCTCCCCGTTCT GCTCAACTTCATCAGCTGTGCCGTCAATCCCTACTGTTTCCTCAATTCCGGATCTGCCACCGGTTAAAACCCGGCCCGAGACGCCTCAGACGCCCGAACC AGTTGTCCAACGAACGATTTCGTTCTCCGACCCGATCGAGACCCAACCGGGCCAACAGCAACAGCCTAGGTACGCCGTGCAGTATGTTCCGGAGCAGCAG CAACAACATTACTCGGGTCCCGCTGCTCCGGTTCAGCATATTCCGGTTTACTATGTCCCTGGACCCGGACCAGTTCAACAACAGGGGAACGTTTCGGTTC AAATGCAAGGGAATGTACCGGTTCAAATGCAAGGGAACGTTCCGGTTCAGATGCAAGGGAACGTTCCCGTTCAAATGCAGGGACAATATGTTCAGCAATA CTCTGTCCCCGCGGGTCAAATGTACCATCAGCAGCAACAACAAGTTCCGGGTATGGGTCAGGTGTACGGGGCGATGCGAGCCGACCAATACGAAGGGGCG AGGATGGTTTCAGATGGTATGAGCCAGCCCCAACAGGTTTATTATGGGGTTCGAGGTGGGAATGCGGTTATGGCGGGTCCAAGTCATCACCCGGGTATGG TTATGAGTGCTGAGGAGATGCATAAGGCCGGGTTGGCTCCAAAGTCGGGTCGGGTATCGGGGCCTTGA
AA sequence Show only first row Show all	>Lus10002588 pacid=23177090 polypeptide=Lus10002588 locus=Lus10002588.g ID=Lus10002588.BGIv1.0 annot-version=v1.0 MSSHHQTDLESAATDSVASSPRSDIHGDAPPRVRFMCSFGGKILPRPHDNLLRYVGGETRMVAVHRSTTFSALLTKLSKIAGFAAVNVKYQLPNEDLDAL ISVSTDEDVENMMDEYDRVALNHNPRSARLRLFLFPSGDPVSRTGSISSLLDGSTNREHWFLDALNSGRSLERMRSEASSIVSEMPDYLFGLENSDDTVS HGREQKLRHKMMFNDSVSASDPGSPAPVISSPFCSTSSAVPSIPTVSSIPDLPPVKTRPETPQTPEPVVQRTISFSDPIETQPGQQQQPRYAVQYVPEQQ QQHYSGPAAPVQHIPVYYVPGPGPVQQQGNVSVQMQGNVPVQMQGNVPVQMQGNVPVQMQGQYVQQYSVPAGQMYHQQQQQVPGMGQVYGAMRADQYEGA RMVSDGMSQPQQVYYGVRGGNAVMAGPSHHPGMVMSAEEMHKAGLAPKSGRVSGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	2.4	0.8527
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	2.8	0.8405
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	2.8	0.8306
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	4.4	0.7850
AT1G47310			unknown protein		Lus10011672 [exp]	6.9	0.7939
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	8.4	0.8174
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	8.5	0.8001
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	8.8	0.7957
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	9.9	0.8387
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	10.7	0.7480

Compare expression of checked genes

Lus10002588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.