Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 581 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 560 / 0 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05140 552 / 0 Nucleoside transporter family protein (.1) AT4G05130 524 / 0 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 486 / 2e-171 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 454 / 1e-158 Nucleoside transporter family protein (.1) AT1G70330 169 / 7e-48 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 153 / 3e-42 Nucleoside transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018413 [exp] 801 / 0 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 586 / 0 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 564 / 0 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 562 / 0 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 506 / 8e-180 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10013002 [exp] 163 / 1e-45 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10029162 [exp] 163 / 1e-45 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10030104 [exp] 159 / 2e-44 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10002590 [exp] 101 / 4e-26 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032300 [exp] 624 / 0 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 618 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 588 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 566 / 0 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 487 / 6e-172 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 175 / 3e-50 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 155 / 5e-43 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 145 / 5e-39 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 76 / 4e-16 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10002589 pacid=23177088 polypeptide=Lus10002589 locus=Lus10002589.g ID=Lus10002589.BGIv1.0 annot-version=v1.0 ATGGAGGCTGCTAATGGAGTGCCGGCCAAGCTCGAGGGGAAATACAAGGCCTTATTGGTCTGTTGGATTCTGGGATTTGGTTCTCTGGTTTCTTGGAACA GTATGTTGACTATAGGAGATTACTACTACAACTTGTTCCCGAAGTACCACCCTTCAAGGGTGCTCACGTTAGTCTACCAACCATTCGCACTCGGTACCAT GGCGATTTTAGCTTACCACGAGTCGAAGATCGATACGAGGTTGAGGAACATTGCTGGATATCTCCTCTTCTTCGCCAGCACTTTGATGCTGCTCGTTCTT GATCTGGCCACATCGGGAAAAGGAGGAGTCGGTCCGTTCGTGGGGATATGTCTGATCGTCGGAGCGTTTGGAGTCGCTGATGCTCACGTTCAAGGCGGTA TGGTCGGGGATTTGTCGTTCATGTGCCCTGAATTCATGCAGTCCTTCTTCGCTGGCCTGGCTGCATCGGGTGTGATGACTTCGGCATTAAGGTTGATAAC GAAAGCTGCATTCGAGAAGGCTCATAACGGTCTTCGCAAGGGAGTTCTGCTGTTTCTTGCGATTGCAGCCTTCATGGAATTCCTGTGTGTACTCCTCTAC ACGTTCTACGTCCCGAAACTCCCGATCGTCAAGTACTACCGCACTAAGGCAGCAAAAGAAGGTTCCAAGACGGTTTCTGCGGATCTCAAGGCTGCTGGAA TTCAAACACCTTCAGAAACATTGGGAGATGATAGCAAGCCGATCGAGCGATTGACCATGAGGCAGCTTCTGCATAAGAACTGGGATTATGCACTCGATCT CTACTTGATCTACGTCTTGACTCTTTCTATCTTCCCGGGATTCATTTCCGAGGATACCGGCACTCACCAACTTGGTTCCTGGTACATTCTCGTGTTGATC GCTGCATACAACGCGTGGGATCTCGTGGGGCGATACGTTCCCCTGATAGAATGCATCAAGTTGAAGTCCCGAAGCTGGTTGACTATCACGATACTTTCAC GGTTTCTGCTTGTGCCCGCGTTCTACTTTACTGCCAAGTATGGAGACCAAGGTTATATGATCGCACTCACTTCGTTTCTAGGGCTGACTAACGGCTACCT CACCGTGTGTGTGATGACTTTGGCACCCAAGGGCTATACGGGTCCGGAGCAGAATGCACTAGGGAATCTGTTGGTTCTGTTCTTGCTAGCTGGGATCTTC TCTGGTGTGGTTCTCGACTGGATGTGGTTGATCGGGAAGAAGAATGCGTTCTGA
AA sequence Show only first row Show all	>Lus10002589 pacid=23177088 polypeptide=Lus10002589 locus=Lus10002589.g ID=Lus10002589.BGIv1.0 annot-version=v1.0 MEAANGVPAKLEGKYKALLVCWILGFGSLVSWNSMLTIGDYYYNLFPKYHPSRVLTLVYQPFALGTMAILAYHESKIDTRLRNIAGYLLFFASTLMLLVL DLATSGKGGVGPFVGICLIVGAFGVADAHVQGGMVGDLSFMCPEFMQSFFAGLAASGVMTSALRLITKAAFEKAHNGLRKGVLLFLAIAAFMEFLCVLLY TFYVPKLPIVKYYRTKAAKEGSKTVSADLKAAGIQTPSETLGDDSKPIERLTMRQLLHKNWDYALDLYLIYVLTLSIFPGFISEDTGTHQLGSWYILVLI AAYNAWDLVGRYVPLIECIKLKSRSWLTITILSRFLLVPAFYFTAKYGDQGYMIALTSFLGLTNGYLTVCVMTLAPKGYTGPEQNALGNLLVLFLLAGIF SGVVLDWMWLIGKKNAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10002589 [exp]	0	1
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10017067 [exp]	6.0	0.8867
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	10.3	0.8892
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	11.2	0.9006
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	14.2	0.8846
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	19.0	0.8869
AT4G27435			Protein of unknown function (D...		Lus10032663 [exp]	27.2	0.8659
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	28.7	0.8587
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	29.3	0.8862
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	30.4	0.8860
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	38.1	0.8656

Compare expression of checked genes

Lus10002589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.