Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11390 796 / 0 Protein kinase superfamily protein (.1) AT1G61640 690 / 0 Protein kinase superfamily protein (.1.2) AT3G07700 127 / 2e-30 Protein kinase superfamily protein (.1.2.3) AT5G64940 116 / 7e-27 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 108 / 1e-24 Protein kinase superfamily protein (.1) AT1G79600 106 / 1e-23 Protein kinase superfamily protein (.1) AT1G71810 104 / 3e-23 Protein kinase superfamily protein (.1) AT5G24970 103 / 1e-22 Protein kinase superfamily protein (.1.2) AT4G24810 98 / 2e-21 Protein kinase superfamily protein (.1.2.3) AT5G50330 96 / 1e-20 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018416 [exp] 1226 / 0 AT1G11390 818 / 0.0 Protein kinase superfamily protein (.1) Lus10037869 [exp] 661 / 0 AT1G11390 692 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 121 / 2e-28 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 122 / 3e-28 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 114 / 6e-26 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 108 / 3e-24 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10020103 [exp] 100 / 2e-21 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 99 / 3e-21 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10041406 [exp] 97 / 2e-20 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032800 [exp] 884 / 0 AT1G11390 860 / 0.0 Protein kinase superfamily protein (.1) Potri.011G041500 [exp] 865 / 0 AT1G11390 879 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 129 / 5e-31 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 111 / 4e-25 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 110 / 4e-25 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 107 / 4e-24 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G061000 [exp] 100 / 8e-22 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.015G091000 [exp] 94 / 4e-20 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 92 / 5e-19 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G003600 [exp] 89 / 4e-18 AT5G24810 956 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10002591 pacid=23177079 polypeptide=Lus10002591 locus=Lus10002591.g ID=Lus10002591.BGIv1.0 annot-version=v1.0 ATGCTCGTTGCCGCGACGTCATTAGCTTCTTCATCAAGAATACTCCGCTTTCGTGATTCGGCTTCACCATGTCAAGGTCCGGAAAATGATCTTGTTGGTA ACTGTTTTAAGCTGAAGTGTGGCGATCCTTCGACCTTGGATTCTGTTGGTTATGTCTTATTTAGAAAGAAATTGGATGCAGAGTTTTTGACGTTTGGGGC TATTAAGAGGATTGCAAGTGCTGTTTCTGAAAGAGACAGTAGTAGTTTTCATTCGGGGTTTAGGAGATATGGAGGTCTAGCTCATCTGGGTTCACGTTTG CCTCAGTCTAGACACTCTGGTGGCTGTTATCAGATTCCACGGGTAGGATCTTTGGGGTTCGGACAGTATGCAGTGAAGCATCAATTTGGTAGGAGCTTCG TTTCTCGTCCTTATTGTGAGTACAATGCGTATCAAGCATGGAGGAGGCTCCTTGCCAAAGCTGGCGAAAATCCCACTGTCATAAGCAAGATAGCTCAAGC TTTCACCTTAGCTTTGACGAGATCGCCTCTCCTGGTGCCAGGTGTATTGGCCCTAACATGCGGGCAAATGGCATGGGCCTCTGCCGGGGATACTTATCAG TATCCTTACCCATTGGCGGATTCTCTGTACAATCGTGCACAAGATGGTCGAGCTTATGTTACATCATTGGTGTATTCTGTTGTGGAAGGAGTTATCTTGC TAGTGAGAGCTTGGTACTTGTCGGTTCTGTTCACACCGAGTTTGTTAATGGCGCCTTTTATGGACATGTTCGGACCGGGATTTCGCCGTTTTTTCCTTCA GGTTGTGCTTCGGACTCTGGAGCTAGCAGGTCCAGCTTTTATCAAATGGGGTCAATGGGCAGCGACTCGACCCGATCTCTTTCCGAGAGATCTCTGCACG AAGCTGTCGGAGCTTCAAACCAAAGCTCCTGAACATAGTTTTGCTTACACAAAGAAGACTATTGAACGAGCATTTGGTCGTAAGATATCCGAAATCTTCG AAGGGTTCGAGGAACAACCGGTTGCTTCGGGAAGTATCGCCCAAGTTCATCGAGCCTCTTTGAGATTCCGACACCCGGGTGTTGGAGAATCGATCCGTAG AGATTTCACCATCATCAACTTAGTAGCTAAGATGTCGAGATTCGTCCCTTCTTTGAATTGGTTGAGATTGGATGAGAGTGTGCAGCAGTTTGGTGTTTTC ATGATGTCTCAAGTTGATCTCGCTAGAGAAGCTGCTCATTTAAGCCGGTTCATCTACAATTTCAGAAGCTGGAAAGATGTCTCCTTTCCCAAACCGGTTT ACCCTCTGGTTCATCCGGCTGTCTTGGTCGAGACTTATGAGCAAGGGGAATGCGTTTCGCACTACGTTGATGATCTAGTCGGCCACGAACGTGTCAAAGC TGCACTTGCTCATATTGGAACTCATGCACTTCTCAAAATGCTTCTGGTGGACAACTTCATCCACGCAGACATGCATCCAGGAAACATTCTTGTCCGAGTC GCCGCACAGAACAAGCCATCTGTGAAGAAGCGGCTCTTCAAATCGAAGCCTCACGTCATTTTCCTTGACGTGGGAATGACTGCCGAGCTCTCGAAGAACG ATAGAGTCAACCTACTCGAGTTCTTCAAGGCTGTAGCACGGAGAGATGGCCGAACTGCTGCAGAGTCCGCATTACTGTTGTCGAAACAGCAGAAATGCCC GAATCCTAAGGCTTTCATCGCGGAAATGGAAGATGCATTCGATTTCTGGGGCACTCCAGAAGGAGATTTGATTCACCCTGCTGAATGCATGCAAGAACTG CTCGAGAAAGTGAGGCGGCACAAGGTGAACATCGATGGAAACGTCTGTACCGTGATGGTCACCACTTTGGTTCTCGAGGGATGGCAGAGGAAGCTAGACC CGAGATATAACGTGATGCAGACGTTACAGACACTGCTGCTTCGAACGGACTGGGCAAAGTCTCTGTCTTACACGATCGACGGGCTGATGGCACCGTAG
AA sequence Show only first row Show all	>Lus10002591 pacid=23177079 polypeptide=Lus10002591 locus=Lus10002591.g ID=Lus10002591.BGIv1.0 annot-version=v1.0 MLVAATSLASSSRILRFRDSASPCQGPENDLVGNCFKLKCGDPSTLDSVGYVLFRKKLDAEFLTFGAIKRIASAVSERDSSSFHSGFRRYGGLAHLGSRL PQSRHSGGCYQIPRVGSLGFGQYAVKHQFGRSFVSRPYCEYNAYQAWRRLLAKAGENPTVISKIAQAFTLALTRSPLLVPGVLALTCGQMAWASAGDTYQ YPYPLADSLYNRAQDGRAYVTSLVYSVVEGVILLVRAWYLSVLFTPSLLMAPFMDMFGPGFRRFFLQVVLRTLELAGPAFIKWGQWAATRPDLFPRDLCT KLSELQTKAPEHSFAYTKKTIERAFGRKISEIFEGFEEQPVASGSIAQVHRASLRFRHPGVGESIRRDFTIINLVAKMSRFVPSLNWLRLDESVQQFGVF MMSQVDLAREAAHLSRFIYNFRSWKDVSFPKPVYPLVHPAVLVETYEQGECVSHYVDDLVGHERVKAALAHIGTHALLKMLLVDNFIHADMHPGNILVRV AAQNKPSVKKRLFKSKPHVIFLDVGMTAELSKNDRVNLLEFFKAVARRDGRTAAESALLLSKQQKCPNPKAFIAEMEDAFDFWGTPEGDLIHPAECMQEL LEKVRRHKVNIDGNVCTVMVTTLVLEGWQRKLDPRYNVMQTLQTLLLRTDWAKSLSYTIDGLMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	8.8	0.7505
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	10.2	0.7378
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10025000 [exp]	11.8	0.6257
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	12.7	0.7466
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	13.4	0.6687
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	16.4	0.7259
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	18.7	0.7131
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	22.0	0.7136
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	23.1	0.7193
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	26.0	0.6944

Compare expression of checked genes

Lus10002591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.