Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18100 207 / 6e-69 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 173 / 2e-55 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G03840 172 / 5e-55 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 166 / 1e-52 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 164 / 5e-52 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 158 / 1e-49 ATC centroradialis (.1) AT5G01300 38 / 0.0009 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018417 [exp] 360 / 1e-129 AT1G18100 205 / 4e-68 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10021372 [exp] 179 / 1e-57 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10020600 [exp] 172 / 3e-55 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 168 / 2e-53 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10013532 [exp] 167 / 5e-53 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10027442 [exp] 165 / 4e-52 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10043385 [exp] 162 / 4e-51 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10004452 [exp] 167 / 1e-50 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 157 / 5e-49 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041000 [exp] 211 / 1e-70 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.004G203900 [exp] 177 / 2e-57 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.009G165100 [exp] 177 / 4e-57 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.010G179700 [exp] 175 / 2e-56 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 175 / 2e-56 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 115 / 5e-33 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 102 / 1e-28 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 101 / 2e-28 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10002592 pacid=23177076 polypeptide=Lus10002592 locus=Lus10002592.g ID=Lus10002592.BGIv1.0 annot-version=v1.0 ATGGCTCGGTCGATCGAGCCGCTGATCGTCGGGAAAGTGATCGGGGATGTGATCGACTTGTTCAATCCGATGGTGGAGCTGACGGTGCACTACGGGTCGA GGAAGATATCGAACGGCTGCGAGATCAAGCCGTCAGCGGCGGTGCAGAGGCCGGTGGTGCAGGTTCTTCATAACGCGCCGCTGTCGTCCGTGCTCTACAC GTTGGTTATGGTGGATCCGGATGCTCCGAGCCCGAGTGAGCCCCGGCTAAGGGAGTGGCTACATTGGATCATGGTGGATATTCCTGAAGGGTCCGATGCT ACGAAAGGGGAGGAGGTGGTGCAGTACATGGGGCCGCAGCCGCCGACGGGCATACACAGGTACGTCCTGGCGCTGTTCCGGCAGGAGAGGTCGCTGGCGG GAAGGATGGGCACGGTGGCGCCCGAAATGCGCGGGAATTTCTGCACCCGCCATTTCGCTGCGTGTAACGGACTCGGCCTGCCGGTAGCCGCCGTCTATTT TAACTCCCGTAAGGAGCCCGCCGTTAAGAAACGGTAA
AA sequence Show only first row Show all	>Lus10002592 pacid=23177076 polypeptide=Lus10002592 locus=Lus10002592.g ID=Lus10002592.BGIv1.0 annot-version=v1.0 MARSIEPLIVGKVIGDVIDLFNPMVELTVHYGSRKISNGCEIKPSAAVQRPVVQVLHNAPLSSVLYTLVMVDPDAPSPSEPRLREWLHWIMVDIPEGSDA TKGEEVVQYMGPQPPTGIHRYVLALFRQERSLAGRMGTVAPEMRGNFCTRHFAACNGLGLPVAAVYFNSRKEPAVKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	1.7	1.0000
					Lus10003843 [exp]	2.0	1.0000
					Lus10022172 [exp]	3.5	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	3.9	1.0000
					Lus10033811 [exp]	3.9	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10000309 [exp]	4.7	1.0000
					Lus10009206 [exp]	6.0	1.0000
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10038324 [exp]	7.3	1.0000
AT2G14378			Protein of unknown function (D...		Lus10028291 [exp]	7.7	1.0000
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10003924 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10002592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.