Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 367 / 1e-128 PapD-like superfamily protein (.1.2.3) AT5G54110 313 / 5e-108 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 298 / 1e-101 PapD-like superfamily protein (.1) AT2G45140 57 / 2e-09 PVA12 plant VAP homolog 12 (.1) AT4G00170 54 / 2e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT5G47180 54 / 2e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT3G60600 53 / 5e-08 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT1G51270 48 / 5e-06 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 44 / 1e-05 PapD-like superfamily protein (.1) AT1G08820 45 / 4e-05 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018420 [exp] 472 / 3e-170 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 313 / 3e-107 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 313 / 3e-107 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 299 / 6e-102 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 66 / 2e-12 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 64 / 1e-11 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 64 / 2e-11 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10010360 [exp] 63 / 2e-11 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10008512 [exp] 56 / 5e-09 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041900 [exp] 381 / 2e-134 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 358 / 3e-125 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.019G116400 [exp] 308 / 6e-106 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 308 / 1e-105 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.013G147800 [exp] 302 / 2e-103 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.001G408200 [exp] 300 / 2e-102 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.014G060900 [exp] 64 / 7e-12 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.001G152100 [exp] 61 / 9e-11 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.003G082500 [exp] 61 / 1e-10 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.002G144000 [exp] 60 / 2e-10 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10002595 pacid=23177082 polypeptide=Lus10002595 locus=Lus10002595.g ID=Lus10002595.BGIv1.0 annot-version=v1.0 ATGGTCGAGAATAAGTCAACTACTGACAGCAGCAACGGGAACAATAAAGTCTGGGGGTTCTTCAGGCTGCCGTTCAAACCCACGGCCACCAATCCCACTT CTTCCTCTTCCTCTTCCTCGTCGCAGCTCCACCACAGCCAGTATAATAACAATAATCAGAACGGCATGGAAGGATCTAATCATCATCAGAATCAGAATCA TCAGCAAGCTCAGCAGCAGACTCCTAATTCGGTTTCATCAGTTGCTAGATCGCTACTCCCGACTCGCCGCCGGCTCAAGCTCGATCCGGCTTCCAAGCTC TACTTTCCTTATGAGCCTGGGAAGCAAGTGAGGAGTGCTATCAAGATTAAGAACAGTAGCAAGTCTCATGTAGCGTTCAAGTTCCAAACTACTGCGCCGA AGAGTTGTTTCATGCGCCCCCCTGGAGCAATTCTTGCTCCTGGAGAGAGTCTCATTGCCACTGTGTTCAAGTTTGTTGAGCATCCGGAGAACAATGAGAA GCCAATGGACCAGAAGAGCAGGGTTAAGTTCAAAATCATGAGCTTGAAGGTGAAAGGGCCGATGGACTATGTTCCTGAGCTGTTTGATGAACAGAAGGAA CAAGTGGCAATAGAGCAGATATTGCGGGTCATTTTTCTCGATCCTGCCCGGACTACCTCTTCTTTAGAGAAGTTGAACCGCCAACTAGCGGAAGCCGACG CTGCAGTCGAAGCCCGCAAGAAACCCCCAGAGGACGCCGGTCCAAGGATCATCGGCGAAGGACTCGTGATAGACGAATGGAAAGAGCGACGGGAAAGATA CCTAGCTCGGCAGCAGGTCGAAGGGGTCGACTCGGTATAG
AA sequence Show only first row Show all	>Lus10002595 pacid=23177082 polypeptide=Lus10002595 locus=Lus10002595.g ID=Lus10002595.BGIv1.0 annot-version=v1.0 MVENKSTTDSSNGNNKVWGFFRLPFKPTATNPTSSSSSSSSQLHHSQYNNNNQNGMEGSNHHQNQNHQQAQQQTPNSVSSVARSLLPTRRRLKLDPASKL YFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFDEQKE QVAIEQILRVIFLDPARTTSSLEKLNRQLAEADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	0	1
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	1.0	0.9461
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	2.4	0.9201
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	8.0	0.8875
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	8.2	0.8969
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	8.3	0.9002
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	13.5	0.8906
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	16.1	0.8941
					Lus10008052 [exp]	16.2	0.8823
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	17.2	0.8592
AT3G54680			proteophosphoglycan-related (....		Lus10017694 [exp]	19.7	0.8137

Compare expression of checked genes

Lus10002595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.