Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 739 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 702 / 0 STP12 sugar transporter protein 12 (.1) AT3G19940 566 / 0 Major facilitator superfamily protein (.1) AT3G19930 557 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT1G50310 552 / 0 ATSTP9 sugar transporter 9 (.1) AT5G23270 542 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT5G26340 529 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 491 / 7e-171 STP7 sugar transporter protein 7 (.1) AT1G77210 482 / 1e-167 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G34580 470 / 7e-163 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018422 [exp] 902 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 572 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10042516 [exp] 523 / 0 AT1G11260 608 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 523 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 521 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040991 [exp] 519 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 497 / 1e-172 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040993 [exp] 475 / 4e-166 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10036325 [exp] 477 / 1e-165 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033600 [exp] 744 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 740 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 595 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 595 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 589 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.001G110400 [exp] 588 / 0 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.007G073850 [exp] 573 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 573 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G109765 [exp] 550 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 549 / 0 AT1G11260 629 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10002597 pacid=23177086 polypeptide=Lus10002597 locus=Lus10002597.g ID=Lus10002597.BGIv1.0 annot-version=v1.0 ATGGGTGGCCTCATCTTCGGCTACGACATCGGAATATCCGGTGGCGTGACGTCGATGAACTCGTTCCTGAAGAAATTCTTCCCGGCGGTGTACCGGAAGA AGAACGAAGAAGGCGATAACAAAGACATGTACTGCCAGTACGACAGCCAGACGCTGACCATGTTCACGTCGTCGCTGTATCTGGCGGCTCTTCTGTCGTC GATTGTCGCTTCTACGGTGACGAGGGTGTTCGGCCGGAAGCTTTCAATGCTCTTCGGCGGTGTGCTCTTCTTCGCCGGAGCTCTCATCAACGGGCTCGCC CAGAACGTCTTGATGATCTATCTCGGCCGGATCTTACTCGGTTTCGGCATCGGTTTCGCGAATCAGTCGGTCCCACTATACCTGTCCGAGATGGCTCCCT ACAGGTACAGAGGAGCCCTTAACATCGGCTTTCAGCTATCAATCACGATTGGAATTCTCGTTGCGAACGTACTCAACTACTTCTTCAGCAAGATCTCGTG GGGATGGAGGCTGAGCTTAGGAGGTGCTATGGTGCCCGCATTGATCATAACGGTCGGTTCGTTGGTCCTCCCCGACACTCCTAATTCTTTAATAGAGCGT GGCAACCACGACGAGGCCAGACAGAAGCTAGAACGAATCCGCGGAGTGGATGATGTCGAGGAGGAGTTCCAAGACCTCGTGGTTGCGAGCGACCAATCGA AATTGATCCAACACCCGTGGAGGAATTTGTTACAAAGGAAGTATAGGCCACATTTGTCCATGGCAATTTTAATTCCCTTCTTCCAACAGCTTACAGGAAT CAATGTCATCATGTTCTACGCACCGGTCTTGTTCAGTAGCATTGGGTTTGGTGACGATGCTGCCTTGATGTCATCCGTGATTACCGGAATCGTTAATGTT GCAGCCACGATGGTTTCGATCTACGGTGTCGATAAGTGGGGTCGAAGGTTCCTCTTTTTGGAAGGTGGCACTCAGATGTTTATCTGTCAGGTAGTAGTGG CAGCTTGCATTGGGGCAAAGTTTGGGTTAGATGGGAACCCAGGGGAGTTGCCCAAGTGGTACGCAATCATTGTGGTTCTCTTCATCTGCATCTACGTGGC AGGGTTCGCGTGGTCATGGGGCCCGCTCGGATGGTTGGTGCCCAGTGAGATCTTCCCCTTGGAGATCAGGTCGGCCGCTCAGAGTGTAAATGTGTCCGTA AACATGCTCTTCACATTCATCGTGGCACAAATCTTCTTAATGACGCTATGTCACTTAAAGTTCGGGCTCTTCCTCTTCTTCGCCTTCTTCGTGGTCATAA TGTCAATTTTCGTCTACTTCTTCCTCCCCGAGACGAAGGGGATCCCCATCGAGGAGATGGGTCAAGTGTGGAGGTCGCATTGGTACTGGTCGAGGTTCGT CGAGACAGAGGATGTCGTGAAGAATAGGAATGTGGAGATGGGGAAATCGATATGA
AA sequence Show only first row Show all	>Lus10002597 pacid=23177086 polypeptide=Lus10002597 locus=Lus10002597.g ID=Lus10002597.BGIv1.0 annot-version=v1.0 MGGLIFGYDIGISGGVTSMNSFLKKFFPAVYRKKNEEGDNKDMYCQYDSQTLTMFTSSLYLAALLSSIVASTVTRVFGRKLSMLFGGVLFFAGALINGLA QNVLMIYLGRILLGFGIGFANQSVPLYLSEMAPYRYRGALNIGFQLSITIGILVANVLNYFFSKISWGWRLSLGGAMVPALIITVGSLVLPDTPNSLIER GNHDEARQKLERIRGVDDVEEEFQDLVVASDQSKLIQHPWRNLLQRKYRPHLSMAILIPFFQQLTGINVIMFYAPVLFSSIGFGDDAALMSSVITGIVNV AATMVSIYGVDKWGRRFLFLEGGTQMFICQVVVAACIGAKFGLDGNPGELPKWYAIIVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSV NMLFTFIVAQIFLMTLCHLKFGLFLFFAFFVVIMSIFVYFFLPETKGIPIEEMGQVWRSHWYWSRFVETEDVVKNRNVEMGKSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	0	1
AT1G15670			Galactose oxidase/kelch repeat...		Lus10013538 [exp]	6.5	0.8217
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	8.5	0.8188
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	14.1	0.8247
AT1G20460			unknown protein		Lus10021826 [exp]	15.2	0.7250
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	18.7	0.7727
AT3G15358			unknown protein		Lus10011176 [exp]	19.2	0.7979
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	22.8	0.7674
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	26.3	0.7800
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	27.0	0.7282
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	34.6	0.7955

Compare expression of checked genes

Lus10002597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.