Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 625 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 613 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 540 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 511 / 8e-173 NDB1 NAD(P)H dehydrogenase B1 (.1) AT2G29990 156 / 2e-40 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 155 / 5e-40 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT5G22140 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT3G44190 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G26340 46 / 5e-05 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT1G13060 45 / 0.0002 PBE1 20S proteasome beta subunit E1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002601 [exp] 899 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 809 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 801 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 746 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 740 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 517 / 4e-175 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 472 / 6e-158 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039768 [exp] 471 / 3e-157 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018540 [exp] 470 / 6e-157 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 650 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 646 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 543 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 534 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 529 / 1e-179 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 191 / 3e-52 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 191 / 4e-52 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 162 / 2e-42 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.010G058100 [exp] 47 / 2e-05 AT3G26340 463 / 6e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.008G177000 [exp] 45 / 0.0001 AT3G26340 473 / 7e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10002599 pacid=23177094 polypeptide=Lus10002599 locus=Lus10002599.g ID=Lus10002599.BGIv1.0 annot-version=v1.0 ATGAACGACGCGATGATGGTGCTTCAGAAAGCTTCGAGAACGTTTCATGATAGTTCTTCGCTGTCGAAGCTGCTCGCCCTCTTCACCGTAAGTGGTGGAG CTCTTGCGGTGGCTTATATCTACGCAAACAGGTCCACTCCTCAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGTGGTTGTTCTTGGAACTGGCTTGGC AGGGACGGCTTTCTTGAAGCGATTGGACAATCCTTCTTACGAGGTCCAAGCGATTTTGCCTCTGGATGAGTTTGCATTCACTACTCCTCCGTCACCTAGT GTTAACATGGTCAAGAAGAAAAACGTTGACGTCCTTTACTCGGAAGCTGAATGTTTGATGATCGATTCCCAGAGCAAGAAGGTTCACTGCCGTTCTTCTA CTCAGAACGTCAATGGACACGGCAATGAAGAATTCAAAGTGGAATATGACTACCTTGTCATAGCAATGGAAGGGTGTCCCAACAGTTTCAACACTCCTGG TGTAGTGGAATATTGCACCTTTCTCAAGGAAGTTGAAGATGCTCACAAGATCCGTAGGTCTGTTGCGGATGCTTTTCAGAAGGCCAGCCTCCCAAGCTTG ACAGATGAAGAGAGGACGAAAATGCTGCATTTCGTGGTGGTCGGTGGTGGCCCTACAGGCCTGGAGTTTGCTGCAGAGCTTCATGATTTCGTGGCTGAGG ATCTGATGAAATTGTACCCCGATGCTAGAAAATACGTCAAGATAACACTACTTGAGGCTGCTGATCATATCCTAACAATGTTTGACAAGCGAATCGTCGA ATTTGCTGAGGATAAGTTCAAAAGAGATGGCATAGATGTCAAACTAGGCTCAATGGTTACCAAAGTATCTGATAAAGAAATCTCTGTTAAAGCGAGAGTC AACGGGCAAGTTAATAAAATGCCTTACGGAATGGTGATTTGGTCAACAGAAATCGGAGTTCACCCTGTTATTAGAGATTTCTTGAAGGAAGTTGGTCAGG GAAACAAACGTGCTTTAGCTACTGATGAATGGCTCCGCGTGGAAGGAACTGATAATGTATACGCTCTTGGCGACTGTGCTACTATTAACCAGCGGAAAGT CCTGGAATATATAACAGCAATATTCAACAAGGCAGACAATGACAACTCTGGCACTCTTACTGTAAAAGAACTCCAAGAAGCAGTGAGCGACATCTGCGAA AGGTACCCTCAGGTGGATCTCTATCTAAAGACCAAGAAGCTCCGCAACATCTCTGACCTCCTCAAGGCTGCGAAAGGTGACGATGCAAAGGGCTCGATCG AACTCAGCATCGAAGAGCTGAAGAGGACACTCAAAGAAGTCGATTTCGAGTTCAATTTCCTCCCAGCAATTGCTCAGGTTGCAGCTCGGCAGGGTGCCTA CCTTGCCAAATGCTTCAACCGCATGGAAGAAGCTGAGAAGAACCCTGAAGGTCCACTTAGGTTCAGAGGCGAGGGCCGCCATCGGTTTCACCCTTTCAGG TATGTCCCAATCAACTATTATCAAAATATTTCATTCTACTCGAGTATGAAGAAGAAGAAAGTGATTTCGCCACGTAATGAGTTTGTTTTCAGATCTCGAG GCAGACCTAGTTCAGCATGGCACGGTACCATCGTCAATAGTATGGTGCTGACAGAGGCTGTTTTAGTCGGCAATGATACTCAAGTCACACATGAGGAAGC CAGGCCAATTAATGAGGTCATGCAGTTTGAGAAATATGATAAATCATCAAATATCAATGTGAGGTTCATGATGGGCTTCTCTGGGACAGGATTGTTCGCT CATTATTTTGTTGAAAATTTGAAAACAACGCCCTTGTCAGATAAGTTGGACGATTGTGTCGACCGTATTGTGAAAAAACTGTTGGCCATGAAGAAAAAAA TCATGAGTAAAAAGGGAATGGAAGATGCTTCCCTTGATGGCGTAGTAGCCGGCGTAGATTATGAGCAAGTGAAACTTTGGTTTATAAGTGACGAGTTGGA AAGTAAACAAGAGTGTGAGGGATTTGCTTTTGGTGGTTGCGGGGAACCATACTGTGCCGATGAGTTTGAGGATGGGTATAGGAAGGATCTCACGATTGCT GAAGCGGTAGAACTCTCCATGAGAGGTATCTATAGGGCTAGCATAAGAGATTTCAATTGTGGAGGGGAGATGGTCGTGAGGGTTTTGGAGAAAGGAGATC CTCCAAAGTTCACGCGATACACTTGTGAAACAAAAGACTTCGACAAATATATCCGTACAAAAGGGATGAATGTAAGCGACAAAACTCTTCTTCCCCCAAA GACTTTTACACAGAAGGTGAAGTTTGTTGCTAGTCTGCACAAGTCTTGTGGAGATAATGCTTTTGATGGTGATGGTGATGAAGATGATGATACGGATAGC GATGGTGATGAAGATGATCGCTATAGATTTGAAGATGATGATATGGATACTGATGATTTTGAAGATGATTACATGGATAGCGATGACCAAATATAA
AA sequence Show only first row Show all	>Lus10002599 pacid=23177094 polypeptide=Lus10002599 locus=Lus10002599.g ID=Lus10002599.BGIv1.0 annot-version=v1.0 MNDAMMVLQKASRTFHDSSSLSKLLALFTVSGGALAVAYIYANRSTPQKKKKKKKKKRVVVLGTGLAGTAFLKRLDNPSYEVQAILPLDEFAFTTPPSPS VNMVKKKNVDVLYSEAECLMIDSQSKKVHCRSSTQNVNGHGNEEFKVEYDYLVIAMEGCPNSFNTPGVVEYCTFLKEVEDAHKIRRSVADAFQKASLPSL TDEERTKMLHFVVVGGGPTGLEFAAELHDFVAEDLMKLYPDARKYVKITLLEAADHILTMFDKRIVEFAEDKFKRDGIDVKLGSMVTKVSDKEISVKARV NGQVNKMPYGMVIWSTEIGVHPVIRDFLKEVGQGNKRALATDEWLRVEGTDNVYALGDCATINQRKVLEYITAIFNKADNDNSGTLTVKELQEAVSDICE RYPQVDLYLKTKKLRNISDLLKAAKGDDAKGSIELSIEELKRTLKEVDFEFNFLPAIAQVAARQGAYLAKCFNRMEEAEKNPEGPLRFRGEGRHRFHPFR YVPINYYQNISFYSSMKKKKVISPRNEFVFRSRGRPSSAWHGTIVNSMVLTEAVLVGNDTQVTHEEARPINEVMQFEKYDKSSNINVRFMMGFSGTGLFA HYFVENLKTTPLSDKLDDCVDRIVKKLLAMKKKIMSKKGMEDASLDGVVAGVDYEQVKLWFISDELESKQECEGFAFGGCGEPYCADEFEDGYRKDLTIA EAVELSMRGIYRASIRDFNCGGEMVVRVLEKGDPPKFTRYTCETKDFDKYIRTKGMNVSDKTLLPPKTFTQKVKFVASLHKSCGDNAFDGDGDEDDDTDS DGDEDDRYRFEDDDMDTDDFEDDYMDSDDQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	0	1
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	2.6	0.9080
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	3.2	0.8917
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	5.7	0.8693
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	7.5	0.8973
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	7.7	0.8972
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	8.8	0.8988
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	9.5	0.8653
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	9.5	0.8685
AT1G77270			unknown protein		Lus10038311 [exp]	12.4	0.8831
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022992 [exp]	12.5	0.8120

Compare expression of checked genes

Lus10002599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.