Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 62 / 1e-10 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G53190 49 / 2e-06 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT1G21460 49 / 3e-06 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G62850 48 / 3e-06 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G21520 45 / 6e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G66770 43 / 0.0002 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G40260 42 / 0.0002 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT3G48740 41 / 0.001 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT3G28007 41 / 0.001 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011700 [exp] 150 / 3e-44 ND / Lus10011965 [exp] 130 / 2e-36 ND / Lus10013986 [exp] 129 / 1e-32 ND 55 / 7e-08 Lus10040838 [exp] 114 / 2e-27 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10004094 [exp] 103 / 2e-27 ND / Lus10001472 [exp] 104 / 7e-27 ND / Lus10023772 [exp] 100 / 2e-24 ND / Lus10007301 [exp] 99 / 1e-23 ND / Lus10018225 [exp] 90 / 4e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355500 [exp] 58 / 2e-09 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 57 / 5e-09 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 55 / 2e-08 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 50 / 9e-07 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 48 / 5e-06 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 48 / 5e-06 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 48 / 5e-06 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.011G043000 [exp] 48 / 7e-06 AT4G21520 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G034600 [exp] 47 / 1e-05 AT4G21520 334 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G074300 [exp] 42 / 0.0004 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10002600 pacid=23177089 polypeptide=Lus10002600 locus=Lus10002600.g ID=Lus10002600.BGIv1.0 annot-version=v1.0 ATGGATAATGTTATGATATCAGCACTTTACGATGACTATATGGAACTTGTCTCTGAAGAAGCAACTCTAAAGATGGTGGCTGAAATCATTCAACGTATGA AGAAGAAAATCAGCGAGATTGTTTCAAGAGAAAGGCAGCAGCATCGTTTTCCATTTGACAAGGAATTGGGTGTACTAGAAGCTGATTTGAAAGATGTTGA AGCTGATATTGCCGCTATTGGTAAAAGGAAAGAAGAAGTGAAGCAGAGACTTCTATGTGCAACGTCGGTGTTGCTTGGTGCGGTGTTTGTGCTGTTTGCT GCTATTGCCTTTAATCTGGTGATCAAGACTAGGAGTGTAGAGTACATGCCGTTCTTCCTTTCGATTGTGACGTTTGTGATGAGCCTCTTGTTCTTGGTGT ACGGAATGCTCAAAGATGATACTTTCATAACCGCAAGTACTGAATGGAAATGGTACGATTCTGGGGGTAGTTCAATTGGCACTACACTACCACTACAGCA ACAGCTCCACTGGACATACCGTGCTTATGATGCTGTGGATGAGATTACTGCTGCCATTTCAGTTGCTTTTAATCCTGGAACCAATTTGGTCGGAGGAATG TTGGTGAGGTGGAAGCTACGAGCCGATGGCGATGATCCACCGGCGCATGTTGAAGGCATTGGGAAGAAGATAACCGTTGAAATGCACCACAACGGTCTCC TCACTCCAACAGAATACCTGTACGGTTCCGTAGCTCGGTTTGATGGTGTTGATCCAGATTTTTTCTCCATGCTTGAACTGAATAAGATGGTCACGATGCT TGAGATTGAGTGGGAATATTGCCAGTTGTTGTGGACGGTTTCAGGCAAGGAAATTACAGAAGGATTGACACCATTAGAGGGGGAAGCTGATATAATGACC TTAATTCGTGGGTTGTCGACTGATGTCTTCGTCGTCAATGTGTATATGAAACGGTTGACTTTATTTGAAGCTAGGCTGAGGATGGCGCAAATAAGAGAAG ATTTGTTAAATTCTGCTTTCCCATATGACATGCCAAGTGACAAGAATGTGGTCCCACAAGATGCTATCGTTGATGACGTGGCACAACCTGACAAACAATT TGGGGCGAACGGTGAACCACCAGAAATGGACAAGGAAACTGAAGAAACCATCTCTGATGCAGCAAAAGCAGCTGAACAATGCTGGCAGGGGTCTTTTTAA
AA sequence Show only first row Show all	>Lus10002600 pacid=23177089 polypeptide=Lus10002600 locus=Lus10002600.g ID=Lus10002600.BGIv1.0 annot-version=v1.0 MDNVMISALYDDYMELVSEEATLKMVAEIIQRMKKKISEIVSRERQQHRFPFDKELGVLEADLKDVEADIAAIGKRKEEVKQRLLCATSVLLGAVFVLFA AIAFNLVIKTRSVEYMPFFLSIVTFVMSLLFLVYGMLKDDTFITASTEWKWYDSGGSSIGTTLPLQQQLHWTYRAYDAVDEITAAISVAFNPGTNLVGGM LVRWKLRADGDDPPAHVEGIGKKITVEMHHNGLLTPTEYLYGSVARFDGVDPDFFSMLELNKMVTMLEIEWEYCQLLWTVSGKEITEGLTPLEGEADIMT LIRGLSTDVFVVNVYMKRLTLFEARLRMAQIREDLLNSAFPYDMPSDKNVVPQDAIVDDVAQPDKQFGANGEPPEMDKETEETISDAAKAAEQCWQGSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002600 [exp]	0	1
					Lus10036058 [exp]	1.7	0.8364
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	3.5	0.8012
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	9.4	0.7745
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	11.4	0.7622
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	17.3	0.7808
AT4G20190			unknown protein		Lus10036246 [exp]	22.0	0.6789
AT5G41720			unknown protein		Lus10006473 [exp]	22.4	0.7545
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	42.6	0.7802
AT3G07870			F-box and associated interacti...		Lus10026789 [exp]	52.5	0.7137
AT3G12000			S-locus related protein SLR1, ...		Lus10003420 [exp]	81.7	0.6752

Compare expression of checked genes

Lus10002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.