Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 608 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 593 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 510 / 1e-174 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 499 / 8e-171 NDB1 NAD(P)H dehydrogenase B1 (.1) AT2G29990 165 / 5e-44 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 164 / 2e-43 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT5G22140 57 / 3e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 48 / 2e-05 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G44190 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002599 [exp] 899 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 768 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 765 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 718 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 712 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 511 / 3e-175 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 470 / 2e-159 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039768 [exp] 467 / 4e-158 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018540 [exp] 467 / 6e-158 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 619 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 613 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 527 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 521 / 2e-179 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 516 / 3e-177 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 196 / 9e-55 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 195 / 2e-54 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 171 / 2e-46 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 47 / 2e-05 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10002601 pacid=23177091 polypeptide=Lus10002601 locus=Lus10002601.g ID=Lus10002601.BGIv1.0 annot-version=v1.0 ATGAACGACGCGATGATGGTACTTCAGAGAGCTTCGAGAACGTTTCATGACAGTTCTTCGCTGTCGAAGCTGCTCGTCCTCTTCACCGTAACTGGTGGAG CTCTTGCGGCGGCTTATATCTACGCAAACAGGTCCACTCCTCAGAACAAGAAGAAGAAGAGAGTGGTTGTTCTTGGAACTGGCTTGGCAGGGACGACTTT CTTGAAGCGATTGGACAATACTTCTTACGAGGTCCAAGCGATTTTGCCTCCGAATGAGTTTCCATTCACTACTCCTCCATTACCTAGTGTTAACATGGTC AAGAAGAAAAACGCTGACGTCCTTTACTTGGAAGCTCAGTGTTTGAAGATCGATTCCCAGAGCAAGAAGGTTCACTGCCGTTCTTCTACTCAGAACGTCA ATGGACACGGCAATGATGAATTCAAAGTGGAATATGACTACCTAGTCATAGCAATGGAAGGGTGTTCCAACAGTTTCAACACTCCTGGTGTAGTGGAACA TTGCACCTTTCTCAAGGAAGTTGAAGATGCTCACAAGATCCGTAGGTCTGTTGCGGATGCTTTTCAGAAGGCCAGCCTCCCAAGCTTGACAGATGAAGAG AGGACGAAAATGCTGCATTTCGTGGTGGTCGGTGGTGGCCCTACAGGCCTGGAGTTTGCTGCAGAGCTCCATGATTTCGTGGCTGAGGATCTGATGAAAT TGTACCCCGATGCTAGAAAATACGTCAAGATAACACTACTCGAGGCTGCTGATCATATCCTAACAATGTTTGACAAGCGAATTGTTGAATTTGCTGAGGA CAAGTTCAAGAGAGATGGCATAGATGTCAAACTAGGCTCAATGGTTACCAAAGTATCTGATAAAGAAATCTTTGTTAAAGCGAGAGTCAACGGGCAAGTT ATCAACATGCCTTACGGAATGGTGATTTGGTCAACAGAAATCGGAGTTCACCCTGTTATTAGAGATTTCATGAAGGAAGTTGGTCAGGGAAACAAACGTG CTTTAGCTACTGATGAATGGCTCCGCGTGGAAGGAACTGATAACGTATACGCTCTTGGCGACTGTGTTACTATTAAACAGCGCAAAGTCCTGGAATATAT AACAGCAATATTCAACAAGGCAGACAATGACAACTCTGGCACTCTTACTGTAAAAGAACTCCAAGAAGCAGTGAGCGACATCTGCGAAAGGTACCCTCAG GTGGATCTCTATCTAAAGACCAAGAAGCTCCGCAACATCGCTGACCTCCTCAAGGTTGCGAAAGGTGACGATGCAAAGGGCTCGATCGAACTCAGCATCG AAGAGCTGAAGAGGGCGCTCAAAGAAGTCGATTTCGAGTTCAATTTCCTCCCAGCAATTGCTCAGGTTGCAGCTCAGCAGGGTGCTTACCTTGCCAAATG CTTCAACCGCATGGAAGAAGCTGAGAAGAACCCTGAATGTCCACTTAGGGCGAGGGCCGCCATCAGTTTCACCCCTTCAGGAGTTTTCGTGAATTTCGAT CTAGAGAGTTTTGAGTGCTATAATCACAAGTTACACAACTATGCGTTTGCTTTTAGGTACATTACTGCATCTCGAGGATGCCACGGTACATGGACTTCTG TACTTATCCCTCGACTTCCTCTACGATGGCTTACTTTTAAGCGTGTCTGTCCCAAAATACTGCGATTGAAGAAGCTGCAATTGAAGAAGCTACCCATTAA AACCCTGGACGGCTACTACTTTGATATAATGATCCGGGGCACCTACAAGGTGAAAAGAGTGAAGAGGATCATCGGACATGTGATAGCAAGGTACAATCGC AGAAACCCGGAGGACTATATAGATTACCGGCTTGACGAACATGTGTTGTACCACCAAGGTGCAGTCTTGCGAGATAGGGACAGTTTAGGTGCGAAGAGAG TCGGAAAATTCCAAGACGACTTTCTCCTTCTTATGCCTATCATCGAAGACGAAGATGAAGACGAAGAGTAA
AA sequence Show only first row Show all	>Lus10002601 pacid=23177091 polypeptide=Lus10002601 locus=Lus10002601.g ID=Lus10002601.BGIv1.0 annot-version=v1.0 MNDAMMVLQRASRTFHDSSSLSKLLVLFTVTGGALAAAYIYANRSTPQNKKKKRVVVLGTGLAGTTFLKRLDNTSYEVQAILPPNEFPFTTPPLPSVNMV KKKNADVLYLEAQCLKIDSQSKKVHCRSSTQNVNGHGNDEFKVEYDYLVIAMEGCSNSFNTPGVVEHCTFLKEVEDAHKIRRSVADAFQKASLPSLTDEE RTKMLHFVVVGGGPTGLEFAAELHDFVAEDLMKLYPDARKYVKITLLEAADHILTMFDKRIVEFAEDKFKRDGIDVKLGSMVTKVSDKEIFVKARVNGQV INMPYGMVIWSTEIGVHPVIRDFMKEVGQGNKRALATDEWLRVEGTDNVYALGDCVTIKQRKVLEYITAIFNKADNDNSGTLTVKELQEAVSDICERYPQ VDLYLKTKKLRNIADLLKVAKGDDAKGSIELSIEELKRALKEVDFEFNFLPAIAQVAAQQGAYLAKCFNRMEEAEKNPECPLRARAAISFTPSGVFVNFD LESFECYNHKLHNYAFAFRYITASRGCHGTWTSVLIPRLPLRWLTFKRVCPKILRLKKLQLKKLPIKTLDGYYFDIMIRGTYKVKRVKRIIGHVIARYNR RNPEDYIDYRLDEHVLYHQGAVLRDRDSLGAKRVGKFQDDFLLLMPIIEDEDEDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	0	1
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	4.0	0.8337
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	6.5	0.7975
AT4G20020			unknown protein		Lus10037713 [exp]	6.7	0.7527
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	8.1	0.7829
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	9.4	0.7829
					Lus10004437 [exp]	10.5	0.7829
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	11.5	0.7829
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	12.0	0.6436
					Lus10021739 [exp]	12.4	0.7829
					Lus10039674 [exp]	13.3	0.7829

Compare expression of checked genes

Lus10002601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.