Plant FIBer expression Database

Lus10002602 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21520 0 / 1 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018434
[exp]
104 / 3e-26 AT4G21520 357 / 2e-121 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10011253
[exp]
99 / 3e-21 AT4G21520 596 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10002602 pacid=23177083 polypeptide=Lus10002602 locus=Lus10002602.g ID=Lus10002602.BGIv1.0 annot-version=v1.0
ATGGGAGAAGAAAGCGCTGCCCAAGAAGATCCCTCCGGTGATGAAGCTACCGGAAATTTCCCAGAAACCCGGAGCCGATTCATCGGTTCTCGGAGAAACA
CCGGTCATCGGAGCTGCCGACGATCAGAGCTCCTGGTACTGGCCTTCGGTTCGGTTCGACGTAACTCCGCACAGAACATACCATTTCTCTCAACAGTTCA
GAGGCTCCACCGTCTCGAACAACTTCCTCAAAGGCGTCAAATGGTTAGTGACTCTCGCTGCACATTTCATCTCCCCTTATCCGTTTCTGGAGGAAGATGC
TGGTTTCTGAGTTTGCATTGTTTCTCTCGCGCTGTGATTAAGTCTCCGGATGGCTCCTGCTTTCTTCAAGCTCGGAGGAGAATAAGCTACGGTTATTTTC
CCTGTAGGTTTCGATGCTCTGGTTATTATGATGGATGTGATGCATCTTCCTATGCTGCAGCTCCTGGTACAGTTTGGAGTTCAGATTCTTATGGTGCAAG
AATGATTGTGGATGAAGGGGAGCCTGTTTATGATTCTGTTGGTATCCCTATATGGCTTCTTCAGACACTGGGAGCTGTGTGTTCGCTACCACTGCTCGCG
ACTATCCAATTCATCAATGGGACGCTACTTCTGGCTGGGTACTTATCGTTTTTTAAACTGTAA
AA sequence
>Lus10002602 pacid=23177083 polypeptide=Lus10002602 locus=Lus10002602.g ID=Lus10002602.BGIv1.0 annot-version=v1.0
MGEESAAQEDPSGDEATGNFPETRSRFIGSRRNTGHRSCRRSELLVLAFGSVRRNSAQNIPFLSTVQRLHRLEQLPQRRQMVSDSRCTFHLPLSVSGGRC
WFLSLHCFSRAVIKSPDGSCFLQARRRISYGYFPCRFRCSGYYDGCDASSYAAAPGTVWSSDSYGARMIVDEGEPVYDSVGIPIWLLQTLGAVCSLPLLA
TIQFINGTLLLAGYLSFFKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21520 Transducin/WD40 repeat-like su... Lus10002602
[exp]
0 1
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10022705
[exp]
3.6 0.8398
Lus10002271
[exp]
3.9 0.7487
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10038655
[exp]
5.3 0.8173
AT2G18980 Peroxidase superfamily protein... Lus10001622
[exp]
5.9 0.7840
AT5G28540 BIP1 heat shock protein 70 (Hsp 70)... Lus10031114
[exp]
7.2 0.7998
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Lus10024230
[exp]
7.7 0.7994
AT2G36660 PAB7 poly(A) binding protein 7 (.1) Lus10027733
[exp]
9.2 0.8002
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Lus10023601
[exp]
10.6 0.7827
AT1G68460 ATIPT1 Arabidopsis thaliana isopenten... Lus10041440
[exp]
11.7 0.7386
Lus10001343
[exp]
12.7 0.7778

Lus10002602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.