Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 310 / 2e-94 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 214 / 4e-61 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032834 [exp] 589 / 0 AT1G58250 345 / 1e-105 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10024283 [exp] 402 / 3e-138 AT1G58250 320 / 1e-97 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 367 / 3e-114 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002603 pacid=23178703 polypeptide=Lus10002603 locus=Lus10002603.g ID=Lus10002603.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCGGTCGTAAATTTCTTCTACGGATTCCTACTCGTTTGCGCCACATTATTATTCTTGTTCCTATTTGCTTCTAGGTTGGTGGCATTGATAT TAGGCTGCGTCGTGGGAGCATCACTTAGATTCCGAGTTGGTGGATGGAAATGTTTAAGAGATGTTGTAGTAAAGTTGAAAAAGGGTCCGGTTGAATCTGT GTCAGTTGGCGAGATAAGAGTTGGGTTACGTCAGCCATTGGTCAAACTGAGTGTTGGTTCTAAGGATCCTAAGTTGCAGTTGTTAATATGTGACCTGGAG ATTGTTTTAAGGCAATCTAGCAAAGGTAGTAGCAGCAAGAAAAGTAGAAGTCGAAGTGGCAGATCGCAGAAAAATCCTGGAAGGGGAAAGTGGATGGTCT TAGCTAATGTAGCTAAATTTCTGTCAGTCTCTGTGACAAATTTGGTTGTCAAGACACCCAAAGCTACTGTCGAAGTTAAGGACCTGCAATTGGGTATATC TAAAGATGGCGGTTCTAATCCAAATCTATTCATTAAGCTACACATATTGTCCATTTATGTTCACATGGGAAACCCACGATTGAGTTGTGACCCACCGTTG AACTCTAACAGTAAAGATTCTACTTCAGGGGCAACAGAAAGTCGTACCGTTCCTTTTAGCTGTGATGAGTTTTTTCTCTCTGTTGAATTTGGTCATGATA GGGAGAAGGGTATAATTATCCAAAATGTTGATATACGTAGTGGAGAGGTTAGTGTGAACCTGAATGAGGAGCTGCTCTCAAAAAAGAAGAGTTCGTCAGA TGCAAATGCTGACAAAGATAAAGGTTCATTTACTGATTCTGCAGTGATTAAAGATCCTCCACAGAAAAAGGATTCTCCAGTCGTGGCGATTTCTAAGTAC ACTGCCATGATTCCGGAAAAGATATGCTTCACGCTTCCAAAACTGGATGTAAGGTTTATGCATAAACAGCATAATCTTTTCGTCAAGAATAGCATAAGGG GCTTCAAATTCAAAAGCATCAAATCACCATGTAGTGAGGATGTGGAAAGCACACGCCTTGACATTGAGGTGGATTTCTCCGAGATGCATCTGCTGAGAGA AGCCGGTCGTTCTGTTGTGGAAATATTGAAAGTTGATCTTATTAGCTTCTTCAATGTACCGAAAGAGGCAAGTCCTTTATCTGAGTCGTGGCAGATTACC TTCGGTTGA
AA sequence Show only first row Show all	>Lus10002603 pacid=23178703 polypeptide=Lus10002603 locus=Lus10002603.g ID=Lus10002603.BGIv1.0 annot-version=v1.0 MAASVVNFFYGFLLVCATLLFLFLFASRLVALILGCVVGASLRFRVGGWKCLRDVVVKLKKGPVESVSVGEIRVGLRQPLVKLSVGSKDPKLQLLICDLE IVLRQSSKGSSSKKSRSRSGRSQKNPGRGKWMVLANVAKFLSVSVTNLVVKTPKATVEVKDLQLGISKDGGSNPNLFIKLHILSIYVHMGNPRLSCDPPL NSNSKDSTSGATESRTVPFSCDEFFLSVEFGHDREKGIIIQNVDIRSGEVSVNLNEELLSKKKSSSDANADKDKGSFTDSAVIKDPPQKKDSPVVAISKY TAMIPEKICFTLPKLDVRFMHKQHNLFVKNSIRGFKFKSIKSPCSEDVESTRLDIEVDFSEMHLLREAGRSVVEILKVDLISFFNVPKEASPLSESWQIT FG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	0	1
AT4G31570			unknown protein		Lus10026934 [exp]	4.9	0.9303
AT1G48090			calcium-dependent lipid-bindin...		Lus10037833 [exp]	5.0	0.9336
AT4G39420			unknown protein		Lus10014010 [exp]	5.3	0.8743
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	8.1	0.9260
AT5G11700			unknown protein		Lus10005497 [exp]	11.4	0.8995
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	11.5	0.8819
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	11.5	0.9078
AT5G58510			unknown protein		Lus10031851 [exp]	13.1	0.8042
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	13.6	0.9089
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	15.9	0.8197

Compare expression of checked genes

Lus10002603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.