Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 2573 / 0 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 2406 / 0 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032833 [exp] 4195 / 0 AT1G58250 2629 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10024282 [exp] 1248 / 0 AT1G58250 1054 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10003839 [exp] 429 / 3e-136 AT1G58250 333 / 3e-103 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 2899 / 0 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10347 [flax] [poplar] Fmp27_GFWDK RNA pol II promoter Fmp27 protein domain PF10351 [flax] [poplar] Apt1 Golgi-body localisation protein domain
Representative CDS sequence Show only first row Show all	>Lus10002604 pacid=23178702 polypeptide=Lus10002604 locus=Lus10002604.g ID=Lus10002604.BGIv1.0 annot-version=v1.0 ATGGTCCTTCGAGAAGAAGTTCCTCCTCGTCCAAAACAACCATCAACTGAATCTAAAGCAATCATGTGGACTTGTACAGTGTCAGCTCCTGAGATGACTA TTTTCCTCTACACTGTCGATGATTTGCCTCTGTATTGTGGGCGTGCACAATCATCACAAGTTTTTGCAAATAACATATCCGTCATGGGAACTACTGTACA CACGGAACATAGTGAACTGAACCTGCACATGGCAGATGAACACCAAGAATGTCTGAAAGAGAGCCCATTCATTGTTGATTCAAATTCAGGTGCAATATTC CACGTACCCAAGTTTATATTGGACTGGGGTAAAAAGGATACTGAACCATCAGAAGAAGATGGTGCTAAGTGTAAATTAGTTCTTTCTATTGATGTCACTG GTACGAGTGTTTATTTGAACTTCAAGCGTTTAGAATCACTTGTTGCCACTGCTGTCTCCTTTCAAGTTCTTGCCAAAAGTTTATCTCCGGGTAAAAAGAC AACACAAAGCCGAGGTCGGAAACCGCTGTCTACGTCTTCTGGGAAAGGGACTCAATTTTTGAAATTTAATCTTGATAAGTGTTGTGTGAATATATCTGGT AATTCAGGATTGGAAAACACAGTTGTTGGTGATCCCAAGCGTGTCAATTATGGATCACAAGGTGGCCGTGTAGTCATTACTACCTCAGCTGATGGCACAC CACGGACTGCAGAGGTGATATCTACAGTTTCAGGTGATCACAAGAAGGTAGGCTACTCTCTCTCCCTTGACATCATCAACTTCAGCCTGTGTGTAAACAA CGGAAAGCAATCTACTGAAGTGGAAATTGAAAGAGCAAGATCAACATATGAGGAATATTTGGAGGAGCATAAGATGGATGCAAAAGTTACATTATTTGAT ATACAGAAAGCTAAATATGTGCGACGAGGTGGTGGTCTTAAAGGGGTGGCTATCTGTTCTCTCTTTAGTGCTATGAATATTGCCCTTGGTTGGGAGCCTG ATTTGCACGTCTCACTGGTTGAACTCATGCTGCGATTGAAGGCAGTGGCACACAATCAGAAGCTTAAGGTATGTGAAAATGAACGCATGGGAGGTTCCTC TAGCTCTGAAGATGTTGAACATAAGAAAGAATCCTTGATGGAATCAGAAAATAATACGGATAAACATAAGAAAAAAGAATCCATTTTTGCTGTTGATGTG GAAATGTTGACTATATCTGTTGCGGCTGGGGATGGAGTTGATGTAGTGGTGCAGGTTCATTCAATTTTCTCAGAAAATGCTCGTATAGGGGTGCTTCTTG AAGGACTTCTTCTTGAAATCAATGGGACTACAGTTGTGAAAAGCAGCAGAATGCAAATTTCCCGTATTCCGAGTGCTTCATCAGATGCAAAGGTGCCAGT TGTTCCCCTCAAATGGGATTGGGTGATTCAAGGACTCTACGTACGTATAAACCTTCCTTTCAGGTTGGAATTGCGTGCCATTGATGATGCTTTTGAAGAA ATGATGCGTGCTTTGAAGCTTGTGACAGCTGCTAAGACTCAACTTATATTTCCAATCAAGAAAGAGACCGCAAAGCCGAAAAAGCCTAGTTCAACAAAAT TTGGTTGTGTAAAGTTCTATATACGTAAACTCATTGCTGATATTGAAGAGGAACCAATTCAGGGTTGGCTTGACGAACACTATCATCTGATGAAGAAGGA GGCATCTGAGGTAGCTGTTAGGTTGAAATTTCTCGAAGACTGTATCTCCGGGGCTACAAATTGCTCCAAAGTTTCTGATGGAAACGATTCTAGTGTGGAG AAAAAGTTCACTTATAATGGGGCTGAGATTGATATGCAAGATGCTTCGGCCATCCAGAAACTGCAAGATGAAATCTATCAGCAGTCATTTAGATCATATT ACGAGGCATGCCAAAAGTTAGTACCTTCAAAAGGTTCTGGTGCCTGTAAGGAAGGGCTACAAGCTGGTTTTAAGCCAAGCACAACAAGAACGTCACTGCT TTTTATTTCTGCTACAGACTTGGATTTAACCTTATCAATGATTGATGGTGGGGATGATGGGATGATAGAGGTTGTTAGGAAGCTTGATCCAGTTGCTATG GAAAATAATATACCGTTTTCTCGACTCTATGGGAGTAATATTCTCTTGCGAACAGCGTCACTGATTGTTCAGTTGAGAGATTACACGTTTCCTCTTCTAG GAGCTACATCTGGTAAATGTGAAGGTCGTCTGGTACTTGCACAACAGGCCACAAGCTTTCAGCCCCAAGTTCCCCAGGATGTTTTTATTGGAAGATGGAG GAAGGTTTGCATGCTCCGGTCAGCTACTGGTACTACTCCTCCAATGAAATCATATTTTGATTTGCCGTTACACTTCCAGAAAGGAGAGGTGTCTTATGGA GTAAGCTATGAACCACCTTTTGCCGATGTGAGCTTTGCTTTCACTGTGGCACTTCGAAGGGCTAACCTAAGTGTTAGAAATCCAGGACCGTTAGTTGTAC CTCCAAAAAAGGAACGTAGCTTACCATGGTGGGATGATATGAGGAACTACATTCACGGGCATATCACCTTGTCCTTTTCTGAAACTCTCTGGCACATTCT TGGTACTACTGATCCTTATGAAAAGCTTGACAAAGCCCAAATAACATCAGGTTACTTGGAGATTCAGCAGTCAGATGGTCGTGTTTTTTTGTCCACAAAG GATTTCAAGGTTTTTATGAGCAGTTTAGATAACCTAGCTCATAGGTGTGGCGTCAAATTTCCTCCTGGTATATCTCAAGCTGCTTTCCTTGAAGCCCCAA CCTTTACTCTTGAAGTGACAATGGACTGGGAATGTGATTCTGACGCCCCAATGAATCATTATCTGTTTGCACTCCCAATTGAAGGAAAACCTCGTGAATT TGTGTTTGATCCTTTTAGATCAACAGCACTGGCCCTGCGATGGAACTTCTCTATTAGACCACCACCTCTTCCTTGTTCTAACGATTCTGATTCACATGAA AATGTTTCACCAACTGTCACTGTTGGGGCACATGATTTAGCATGGTTAGTCAAGTTCTGGAATTTGAACTATCTTCCACCTAATAAGATACGCACCTTCT CCAGATGGCCTCGTTATGGGGTTCCAAGAATTGTTAGATCTGGTAATTTGGCACTGGACAAGATTATGACGGAGTTTTATCTTCGCATAGATGTTACACC TACTTGCATCAAGAATCGGCCGATGCATGATGATGATCCAGCTAAAGGACTCACTTTTAGTATGTCCAAAGTTAAGTGTGAGGCATGTTATGGTCGGGGT AAACAAAAATTTACTTTTGAAAGCATACGTGACCCGCTTGATCTCGTCTACATGGGTATTGATCTCCATGTTCCAAAGGCTATCATCAATAAAGAAGAAT TAACTAGTGTTGAAAAAGTACTACAGGTGAATAGGAAAAATTGTTCAAGTGAAAAGAACAATACAGTGAGCAGTGGCACGGAGAAGCACCGTGATTCAGG GTTTATTTTTTCCTGCGATTATTTTACAATCAGAAGGCAATCACCAAAAGCAGATACGTCAAAACTATTGGCATGGCAAGAAGCTGGCAAAAGAAATTCT GAGCCATCAAATCTGAGATCTGAGTTGGATCATGGCAGTGATAGTGATGAGCATGCACGATCGGATCACAGTGATGATGATGATGGTTATAATGTTGTAG TAGCTGACAATTGTCAGCGCATTTTTGTGTATGGTCTCAAGATTTTATGGAATCTTGAAAATAGGGATGCTATTTGCTGTTTTGCTGGTGGCCTGGCTAA AGCATTTGCACCTCCAAGGCCTTCTCCATCTCGGCAGTATACACAAAGGAAACTACTTGAGAAAAGCCAAGCACCCATTGAAGCTGAAGTATCATCCCAA GATGATAACTCTAAGACTCCACCTACTGGACAAAATGATGATCCCACTCCTGAACCTGAAATCGCTGAGACATCTGGAACTACTTCACCTCCATCAAATT CAACTAAAATAGAGAATTTCTCATTTCCTGCTATTGCAGCAAATGCTAGCAAGGATGAGGGGGATGGAACTCGTCATTTCATGGTTAATATAATTGAGCC ACAGTTCAATCTTCATTGTGAAGAAGTCAATGGTAGGTTTCTACTTGCTGCTGTCAGTGGGCGTATTTTAGCTCGATCCTTTCATTCAGTCCTCCAAGTT GGACACGAGATTATCGCACAAGCATTAGGAAATGGAGATGTGCAACTTCCTGAAACTGTACCTGAGATGACATGGACTCGCATGGAGTTGTCAGTGATGT TAGAGCATGTACAGGCTCATGTTGCTCCGACTGATGTTGATCCAGGGGCTGGAGTGCAGTGGCTTCCAAAAATCCGTAAGAGTTCTCCAAAAGTAAAGCG CACTGGTGCTCTCCTAGAGAGAGTTTTTATGCCTTGTGATATGTATTTTAGGTATACAAGACACAAAGGAGGGACCCCAGAGTTGAAGTTCAAACCGTTG AAAGAGCTGACATTCAATACTCATAACATAACAGCAACAATGACATCTCGTCAGTTTCAAGTCATGCTGGGTGTCCTGACAAATCTCCTCTTTGCTCGGC TTCCAAAGCCCAAAAAGAATTGTTTGTCACTTCCTACTGAAGAAGAGGACATGGAAGAGGAAGCAGATGCGGTAGTCCCTGATGGTGTCGAAGAGGTGGA ACTTGCTAGAATTGACCTGCAAAAAGAGGAGCAACAGCTGATATTGCTTTTCGATGACATCAGGTCACTTTCTCTAGATTGTTGTGATTCATCAGCCGGC ATCGAACAAGACCTGTGGATGATAACTGGAGGAAGATCTGCTTTGGTAGAAGCGATGAAGAAAGAGGTTGTTCATGCAAAAACATCCCGAAAAGAAGCAT CATCATCATTGAGAGAGGCTCTACAGAAAGCTGCACAGTTGCGTCTGATGGAAAAGGAGAAGAACAAAAGTCCATCCTATGCTATGCGTTTATCTTTGCA GATTAATAAAGTAGTATGGAGCATGCTGCTAGATGGTAAACCTATTGCAGAAGCTGAGATAAATGATATGATTTTTGATTTTGATCGTGACTATAAGGAT GTGGGGGTTGCTCTGTTTACGACCAAGGTTGTCATTGTGAGAAACTGTCTCCCTAATGCAAAGTCTGATAAGGTTCTGTCGCCATGGAATCCTCCAGCAG AGTGGGGAAAAAAAGTGATGCTGCGGGTGGATGCCAAACAAGGCAAACCAAAGGATGGAAATTCTCGTATTGAACTTTTACAGGTGGAGATCTATCCGCT TAAAATTTATCTGACGGAGAATTTGTACAGAATGATGTGGACATATTTCTTTCCTGAAGAAGAACAAGATTCACAACGTCGTCAGGAAGTGTGGAAAGTT TCAACGACTGCTGCTGTGAAACGTCTTAAAAAGGGGTTTTTTAGCAGTGAAGGTCCATCGAAAACTAGCGGAGGGAAGGAACCCGATTTGCTGTCGAAGC TGACTGGAAGCACAGGGAATATACTGAGAAGGACTTCTTCTTTCGACAGAACATGGGAGGAAACTGTTGCTGAATCTGTTGCTAATGAACTTCTGCAAGC TCATTCCGGTGTTTCTTCCTCAAAGGGCGAGCCTCCTCTTGCCATTGAGGCTGCCCCCAATGATAAAACTAAGTCCAAAGATCCCAAGGCTATCAAGTCT GCTCGGCCATCTCAAGAAGACAAGAAGGTGGTGAAGACGACGACTATCCAAGACGACAAAACATCTCGTCCTCGTAAAGTCATGGAATTCCAGAATATCA AGATCAGTCAGGTTGAGCTACAAATTACATACGAAAGCTCGAGATTTAATCTGCACGAACTCAAGCTGCTGATGGATACATTTCACCGTGCGGAGTTCAC TGGAACTTGGAGGAGGCTCTTCTCCCGAGTTAAGAAACATGTTGTTTGGGGAACTCTGAAATCAGTGACAGGAATGCAGGGTAAGAAATTCAAGGACAAG GGGCATACCCAGAAAGAGCCTATTGTTGTTCCTCCTGCACTACCAACTGACAGCGAGCTTAACCTCCTCAGTAGTGATAATGAAGTTGCTGGGAATTCAG CAGATCAAAACTTATTGAAACGTCCAGCTGATGGAGCAGCAGCTGGTGATGGATTTGTAACTTCTATAAAGGGTCTCTTCGGCAATCAACGCCGCAAGGC AAAGGCATTTGTGCTGAGGACAATGAGAGGTGATGAAAATGAGTTCCAGGGTGACTGGAGTGACAGTGAGGCTGATTTCTCCCCCTTTGCTCGTCAGCTC ACCATAACCAAGGCTAAAAAGCTTATTAGGAGGCACACCAAGAAATTCAGGTCCAGCAGGAAAGGTACAGCTCAACAGCAAGATTCCTCCGCTCCGTCAT CCCCCAGAGAAACTACTGCATTCGAGATTGAGAGTGATTCTTCTAGCGGCTCTTCACCTTCACCTTCCTTTGATGATTTCCCAGAAGGCTTCCAAGTTGA CGGCCATGCCACCTTAATCAAAGATACAGAGACTACTGAGGAGAGCCTTTGA
AA sequence Show only first row Show all	>Lus10002604 pacid=23178702 polypeptide=Lus10002604 locus=Lus10002604.g ID=Lus10002604.BGIv1.0 annot-version=v1.0 MVLREEVPPRPKQPSTESKAIMWTCTVSAPEMTIFLYTVDDLPLYCGRAQSSQVFANNISVMGTTVHTEHSELNLHMADEHQECLKESPFIVDSNSGAIF HVPKFILDWGKKDTEPSEEDGAKCKLVLSIDVTGTSVYLNFKRLESLVATAVSFQVLAKSLSPGKKTTQSRGRKPLSTSSGKGTQFLKFNLDKCCVNISG NSGLENTVVGDPKRVNYGSQGGRVVITTSADGTPRTAEVISTVSGDHKKVGYSLSLDIINFSLCVNNGKQSTEVEIERARSTYEEYLEEHKMDAKVTLFD IQKAKYVRRGGGLKGVAICSLFSAMNIALGWEPDLHVSLVELMLRLKAVAHNQKLKVCENERMGGSSSSEDVEHKKESLMESENNTDKHKKKESIFAVDV EMLTISVAAGDGVDVVVQVHSIFSENARIGVLLEGLLLEINGTTVVKSSRMQISRIPSASSDAKVPVVPLKWDWVIQGLYVRINLPFRLELRAIDDAFEE MMRALKLVTAAKTQLIFPIKKETAKPKKPSSTKFGCVKFYIRKLIADIEEEPIQGWLDEHYHLMKKEASEVAVRLKFLEDCISGATNCSKVSDGNDSSVE KKFTYNGAEIDMQDASAIQKLQDEIYQQSFRSYYEACQKLVPSKGSGACKEGLQAGFKPSTTRTSLLFISATDLDLTLSMIDGGDDGMIEVVRKLDPVAM ENNIPFSRLYGSNILLRTASLIVQLRDYTFPLLGATSGKCEGRLVLAQQATSFQPQVPQDVFIGRWRKVCMLRSATGTTPPMKSYFDLPLHFQKGEVSYG VSYEPPFADVSFAFTVALRRANLSVRNPGPLVVPPKKERSLPWWDDMRNYIHGHITLSFSETLWHILGTTDPYEKLDKAQITSGYLEIQQSDGRVFLSTK DFKVFMSSLDNLAHRCGVKFPPGISQAAFLEAPTFTLEVTMDWECDSDAPMNHYLFALPIEGKPREFVFDPFRSTALALRWNFSIRPPPLPCSNDSDSHE NVSPTVTVGAHDLAWLVKFWNLNYLPPNKIRTFSRWPRYGVPRIVRSGNLALDKIMTEFYLRIDVTPTCIKNRPMHDDDPAKGLTFSMSKVKCEACYGRG KQKFTFESIRDPLDLVYMGIDLHVPKAIINKEELTSVEKVLQVNRKNCSSEKNNTVSSGTEKHRDSGFIFSCDYFTIRRQSPKADTSKLLAWQEAGKRNS EPSNLRSELDHGSDSDEHARSDHSDDDDGYNVVVADNCQRIFVYGLKILWNLENRDAICCFAGGLAKAFAPPRPSPSRQYTQRKLLEKSQAPIEAEVSSQ DDNSKTPPTGQNDDPTPEPEIAETSGTTSPPSNSTKIENFSFPAIAANASKDEGDGTRHFMVNIIEPQFNLHCEEVNGRFLLAAVSGRILARSFHSVLQV GHEIIAQALGNGDVQLPETVPEMTWTRMELSVMLEHVQAHVAPTDVDPGAGVQWLPKIRKSSPKVKRTGALLERVFMPCDMYFRYTRHKGGTPELKFKPL KELTFNTHNITATMTSRQFQVMLGVLTNLLFARLPKPKKNCLSLPTEEEDMEEEADAVVPDGVEEVELARIDLQKEEQQLILLFDDIRSLSLDCCDSSAG IEQDLWMITGGRSALVEAMKKEVVHAKTSRKEASSSLREALQKAAQLRLMEKEKNKSPSYAMRLSLQINKVVWSMLLDGKPIAEAEINDMIFDFDRDYKD VGVALFTTKVVIVRNCLPNAKSDKVLSPWNPPAEWGKKVMLRVDAKQGKPKDGNSRIELLQVEIYPLKIYLTENLYRMMWTYFFPEEEQDSQRRQEVWKV STTAAVKRLKKGFFSSEGPSKTSGGKEPDLLSKLTGSTGNILRRTSSFDRTWEETVAESVANELLQAHSGVSSSKGEPPLAIEAAPNDKTKSKDPKAIKS ARPSQEDKKVVKTTTIQDDKTSRPRKVMEFQNIKISQVELQITYESSRFNLHELKLLMDTFHRAEFTGTWRRLFSRVKKHVVWGTLKSVTGMQGKKFKDK GHTQKEPIVVPPALPTDSELNLLSSDNEVAGNSADQNLLKRPADGAAAGDGFVTSIKGLFGNQRRKAKAFVLRTMRGDENEFQGDWSDSEADFSPFARQL TITKAKKLIRRHTKKFRSSRKGTAQQQDSSAPSSPRETTAFEIESDSSSGSSPSPSFDDFPEGFQVDGHATLIKDTETTEESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	0	1
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	2.8	0.7618
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	3.0	0.7531
AT5G55060			unknown protein		Lus10043118 [exp]	3.9	0.7959
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	10.4	0.7382
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	12.6	0.7407
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	13.6	0.7430
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	13.7	0.6631
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	14.5	0.7054
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	15.7	0.7065
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	16.7	0.7063

Compare expression of checked genes

Lus10002604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.