Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10920 768 / 0 L-Aspartase-like family protein (.1) AT5G50950 60 / 2e-09 FUM2 FUMARASE 2 (.1.2.3) AT2G47510 58 / 1e-08 FUM1 fumarase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032846 [exp] 993 / 0 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1) Lus10028532 [exp] 54 / 3e-07 AT2G47510 881 / 0.0 fumarase 1 (.1.2) Lus10009114 [exp] 51 / 2e-06 AT2G47510 882 / 0.0 fumarase 1 (.1.2) Lus10032296 [exp] 50 / 3e-06 AT5G50950 849 / 0.0 FUMARASE 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106200 [exp] 821 / 0 AT5G10920 787 / 0.0 L-Aspartase-like family protein (.1) Potri.002G201300 [exp] 53 / 3e-07 AT2G47510 877 / 0.0 fumarase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00206 [flax] [poplar] Lyase_1 Lyase
Representative CDS sequence Show only first row Show all	>Lus10002606 pacid=23178705 polypeptide=Lus10002606 locus=Lus10002606.g ID=Lus10002606.BGIv1.0 annot-version=v1.0 ATGAAATCCCACATCCTCTCCTCGTCGCCTTCTATTCTCTACCGCTCTTCCGCCATCGCCGATTCCGCATATTTTAACAAACCCAAGCTCCTCCATTACT CGGCTATTTCTTCCTTCCGCTTTTCCGGCAAGAGGAATATCGGGTTTTGCGACGTCAGAGCAATGGCTGCTTCTTCCCAGACCCAAAATGACGGGCCAAT CCAGAACAACAAAGAAGCCAAACTATGGGGCGGTAGGTTCGAAGATAGCGTCACGGATATTGTCGAGAAGTTTACCGAATCGATTTCATTCGATAAGGAG CTGTATAAGCACGATATCATGGGTAGCAAAGCCCACGCGTCAATGCTAGCTGCTCAGGGATTGATGACTGCAAGTGATAGGGATATGATTGTTCAAGGCC TTGATGAGATTCAGAGGCAAATTGAGGCTGGAGACTTTGTGTGGAGGACAGACAGGGAGGACGTGCACATGAACATCGAGGCGTCTCTTACAGATATGAT TGGCGAGCCTGCAAAAAAGCTACACACTGCTAGAAGCAGAAATGACCAAGTTTTGACCGACTTCAGATTGTGGTGTCGTGACGCCATTGATAGGATTGTG GCATCTGTTAGGCATCTTCAGGTTTCTTTGGTGACTCTGGCTCTAAAAAATGAGGGGCTTATTGTTCCTGGCTATACGCATTTGCAAAGGGCTCAACCTG TTTTGTTATCGCATCTTCTGTTAGCCTTTGTTGAACAGCTTGACCGTGATGTGGGTAGACTGCTCGATTGTCAATCCAGGATGAATTTCTGCCCCTTGGG TGCATGTGCATTGGCTGGCACTGGTCTACCTATCGATAGGTTTATGACTTCTGATGCTTTGGGTTTTACTGCTCCCATGAGGAACAGTATTGATGCAGTT TCAGACCGAGATTTTGTCTTGGAGTTTCTTTCTGCTAACTCTATTATCGCCATTCATCTATCTCGGTTGGGTGAAGAGTGGGTATTGTGGGCTTCGGAGG AATTTGGATTCCTCACGCCAAGTGATGCTGTTTCTACCGGAAGTAGCATCATGCCTCAGAAGAAAAACCCAGATCCCATGGAACTTGTTCGTGGGAAATC TGCTAGGATTGTTGGTGACCTAGTTACCCTATTAACACTGTGCAAGGGCCTTCCACTTGCTTATAACCGTGATTTGCAGGAAGATAAGGAACCTGTATTT GACAGCGTTAAAACAATCGTAGGTATGCTTGATGTTTCAACAGAATTTGCACAAAACATCACCTTTAATAAACAGAGAATTGAAAAGGCATTACCAGCTG GTTACCTGGATGCTACAACACTTGCAGATTATCTCGGCATGCCGTTCAGAACATCACATGATATAGTTGGCCGCGCAGTCGCATTGTGTTTTGCTAAAAG CTGCCAGCTGAAGGAATTAAGTGTGAACGAGTTGAGAAGCATCAATCCAATTTTCGAGAATGATGTATACGAGTACCTTGGAGTGGAAAATGCAGTCAAT AAGTTCTGCTCATATGGTTCTACTGGGTCAAGCTGTGTTTCTGATCAACTGGCCCACTGGGTGGAAAGACTAGATATCAATACCAAGTAG
AA sequence Show only first row Show all	>Lus10002606 pacid=23178705 polypeptide=Lus10002606 locus=Lus10002606.g ID=Lus10002606.BGIv1.0 annot-version=v1.0 MKSHILSSSPSILYRSSAIADSAYFNKPKLLHYSAISSFRFSGKRNIGFCDVRAMAASSQTQNDGPIQNNKEAKLWGGRFEDSVTDIVEKFTESISFDKE LYKHDIMGSKAHASMLAAQGLMTASDRDMIVQGLDEIQRQIEAGDFVWRTDREDVHMNIEASLTDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDRIV ASVRHLQVSLVTLALKNEGLIVPGYTHLQRAQPVLLSHLLLAFVEQLDRDVGRLLDCQSRMNFCPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAV SDRDFVLEFLSANSIIAIHLSRLGEEWVLWASEEFGFLTPSDAVSTGSSIMPQKKNPDPMELVRGKSARIVGDLVTLLTLCKGLPLAYNRDLQEDKEPVF DSVKTIVGMLDVSTEFAQNITFNKQRIEKALPAGYLDATTLADYLGMPFRTSHDIVGRAVALCFAKSCQLKELSVNELRSINPIFENDVYEYLGVENAVN KFCSYGSTGSSCVSDQLAHWVERLDINTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	0	1
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	1.4	0.9675
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	1.7	0.9665
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	2.2	0.9732
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	5.3	0.9629
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	5.5	0.9636
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	5.7	0.9650
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	6.9	0.9593
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	7.2	0.9582
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	8.8	0.9505
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	9.0	0.9606

Compare expression of checked genes

Lus10002606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.