Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 361 / 2e-121 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 344 / 7e-115 Eukaryotic aspartyl protease family protein (.1) AT2G35615 288 / 1e-92 Eukaryotic aspartyl protease family protein (.1) AT1G31450 282 / 2e-90 Eukaryotic aspartyl protease family protein (.1) AT2G28010 248 / 6e-78 Eukaryotic aspartyl protease family protein (.1) AT2G28040 241 / 4e-75 Eukaryotic aspartyl protease family protein (.1) AT2G28030 229 / 1e-70 Eukaryotic aspartyl protease family protein (.1) AT2G03200 213 / 8e-64 Eukaryotic aspartyl protease family protein (.1) AT2G28220 210 / 2e-60 Eukaryotic aspartyl protease family protein (.1) AT3G61820 197 / 2e-57 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020279 [exp] 503 / 3e-177 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 416 / 8e-143 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 412 / 6e-141 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 410 / 2e-140 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 409 / 7e-140 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 408 / 2e-139 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 407 / 4e-139 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 380 / 9e-129 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 369 / 4e-124 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 371 / 3e-125 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 349 / 9e-117 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 298 / 2e-96 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 227 / 2e-69 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 226 / 9e-69 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 197 / 2e-57 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 192 / 2e-55 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 184 / 2e-52 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 179 / 2e-50 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 175 / 3e-49 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002610 pacid=23168839 polypeptide=Lus10002610 locus=Lus10002610.g ID=Lus10002610.BGIv1.0 annot-version=v1.0 ATGGAAGGTGTCACTAATACTCTCCTCCTCGTCCTTGTCGCTGCCGTCCTCGTTTCAGTCACTAAAACCTCCTCCGCAAGCAAAGGCTTCAGCATCGACC TCCTCCACCGCGACTCCCCCAACTCGCCCTTGTACAACCCGCACGAGACTCGATCCCAACGCCTCGAGAATGCCGCCAAGCGTTCGGTCCGTGGGGGCCG CCACCGCCTCCAGAGAGTCAAGTCTGCCCGTCTGGACGACGCTGAGGCCCCACTAATCGCCGACACCGCCGAGTACTTGGTGGAGATATCCCTAGGGACC CCGAGCTTTCCAATCTTAGCGATTGCTGACACGGGTAGCGACATCATATGGACGCAATGCAAACCATGCAGCGACTGCTACGAGCAGACCGCTCCGTTGT TCGATCCAAAGAAGTCGAGTACTTACAAGGTGGTTCCTTGCTCTTCAAGCCTTTGTTCGGAACTTAGTGGTGAAGGTAGCTCTTGCACAAACTCTAGCAG TGCTTGTGGATATCAGGTGTCCTACGGAGACCAATCGCACACAATCGGAGATCTGGCCACCGACACATTGACACTCAACTCGAGTAGCGGCCGTCAAGTC GTGCTCCCCAAGAAGATAATCGGATGCGGCCATCAAAACTCCGGAACATTCTCGAACACCACCTCGGGAATCGTGGGCCTAGGAGGCGGGCCAGCTTCGC TCGTCTCCCAATTGGGCTCAACTATATCAGGAAAATTCTCGTACTGCATGCCCCCATTTGGGTCCAAAAACCCCAGCACGCTCAGCTTCGGCCAAAACGC CGCCGTTTCGGACGGGGTCTCGACCCCACTGCTCACCGACGAGTCGAACCCAACTTTCTACTTCCTCCAGCTGGACGCCATCAGTGTGGGGACCACACGC ATCCCCTTCTCCAATGGTGGCGGCGAATACAAACGCGGGCCCACAGCCACCTCGAAATCGCCTTCCTCCTCCACCGCCACTCAACAACAAGGGAACATCA TCATCGATTCGGGGACCACGTTGACCTTCGTCCCCAGCACCGTCCTGTCCCAGCTGTCGGACGCCGGCGCACACCCCGGCGGGGGGGGGGGCGTCGGCGG CGGGACTTCTACCCAAGTGGACGGCTTCTCGCCTTGCTACCAGGACGGCGCCGGGAGCTTGAAGGTGCCGAAAGTGACGATGCATTTCGACGGCGGTGAT GTGGCGCTGACGCAAGCGAACACGTTTCTCGAGGTGGCCGACGGCGTCTTCTGCTTCGCGTTTGTCGGATCGGATTCGCTCTCGATCTACGGAAACGTGG CGCAGCAGAATTTCTTGGTTGGATATGATCTCAAGGGAGGGAGTGTGACCTTCAAGCCCACGGATTGCACTGACGGAAATGGTTACAAAAATTAA
AA sequence Show only first row Show all	>Lus10002610 pacid=23168839 polypeptide=Lus10002610 locus=Lus10002610.g ID=Lus10002610.BGIv1.0 annot-version=v1.0 MEGVTNTLLLVLVAAVLVSVTKTSSASKGFSIDLLHRDSPNSPLYNPHETRSQRLENAAKRSVRGGRHRLQRVKSARLDDAEAPLIADTAEYLVEISLGT PSFPILAIADTGSDIIWTQCKPCSDCYEQTAPLFDPKKSSTYKVVPCSSSLCSELSGEGSSCTNSSSACGYQVSYGDQSHTIGDLATDTLTLNSSSGRQV VLPKKIIGCGHQNSGTFSNTTSGIVGLGGGPASLVSQLGSTISGKFSYCMPPFGSKNPSTLSFGQNAAVSDGVSTPLLTDESNPTFYFLQLDAISVGTTR IPFSNGGGEYKRGPTATSKSPSSSTATQQQGNIIIDSGTTLTFVPSTVLSQLSDAGAHPGGGGGVGGGTSTQVDGFSPCYQDGAGSLKVPKVTMHFDGGD VALTQANTFLEVADGVFCFAFVGSDSLSIYGNVAQQNFLVGYDLKGGSVTFKPTDCTDGNGYKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002610 [exp]	0	1
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	6.4	0.8248
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	9.1	0.8228
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	11.1	0.8152
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	13.4	0.8112
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	15.0	0.7897
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	15.2	0.7902
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	15.8	0.8024
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	16.7	0.7956
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	17.5	0.8004
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	19.6	0.7764

Compare expression of checked genes

Lus10002610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.