Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 375 / 5e-127 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 368 / 3e-124 Eukaryotic aspartyl protease family protein (.1) AT1G31450 333 / 2e-110 Eukaryotic aspartyl protease family protein (.1) AT2G35615 330 / 4e-109 Eukaryotic aspartyl protease family protein (.1) AT2G28010 249 / 1e-78 Eukaryotic aspartyl protease family protein (.1) AT2G28030 243 / 6e-76 Eukaryotic aspartyl protease family protein (.1) AT2G28040 236 / 2e-73 Eukaryotic aspartyl protease family protein (.1) AT2G03200 230 / 2e-70 Eukaryotic aspartyl protease family protein (.1) AT2G28220 211 / 6e-61 Eukaryotic aspartyl protease family protein (.1) AT1G01300 204 / 3e-60 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002611 [exp] 588 / 0 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 518 / 0 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 495 / 1e-173 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 489 / 9e-172 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 487 / 2e-170 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 460 / 3e-160 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 456 / 1e-158 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 454 / 2e-157 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 426 / 1e-146 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 402 / 1e-137 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 377 / 1e-127 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 324 / 7e-107 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 233 / 7e-72 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 233 / 1e-71 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 209 / 6e-62 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 206 / 7e-61 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 187 / 1e-53 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 185 / 8e-53 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 177 / 5e-50 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002612 pacid=23168850 polypeptide=Lus10002612 locus=Lus10002612.g ID=Lus10002612.BGIv1.0 annot-version=v1.0 ATGGCTAGTCGTGTCTCCTCCGCATTCGCCCTCGCAATTTCGCTAGCCATAGTCGTAGTTGTATGCACGGTCGATGCCAATGGTGGTGGTGGCTACGACG GCTTCAGCGTTAGTCTGATCCACCGTGACTCGTCCAGCTCGCCCTTCTACAGCCCTAGCGAGACACAGTCTGAGCGAGCTGCGAATGTTGTGAGGCGGTC CCTCGACCGAGTGGCTCGTTTCACCGACATGTCTGGCATCATCGAACATACTTATGACCCTAATTTGGCGCCTACTTCCCCGGTCGCTGCTTTGGTAGCC AACGACGGGGAATACCTGATGAACATCTCCCTGGGCTCGCCCCCGTTTCCCGTTCTGGCGATTGCTGACACGGGGAGCGACATCATATGGGTACAGTGCA AGCCTTGTACCGACTGTTACAAGCAGAAAGATCCAGTGTTCGATCCCAAATTCTCGAGCACGTACAGGCCGGTACCGTGTGCCTCCGAGACGTGCACTTT GCTCGCTGACGAAGGGAGCTTCTGCGCCAAGCACGACGATATTTGTCAGTACCAAGTCACTTACGGGGACGGTTCGAACACGGAAGGAGATTTAGCGACC GAGACGTTGGCTCTCGGAACGACTGTCACGGGCGTGATTGCAGAGTTTCCCAGCACGCTCTTCGGCTGCGGCCACAAGAACAAGGGAACGTTCTCGCCAA ACGGTTCCGGCATCATCGGGCTGGGAGAAGGTCCCGCTTCACTCATTACCCAGCTCGGCCCGACAATCGGCGGGAAATTCTCCTATTGCATGGTCCCATA CGGTGCGGCCCCTGCGACGACTAGTACGATGCACTTTGGTAAAAATGCAGTCGTTTCGGGGACCAAAGTGGTTACCACTCCTTTACTCTCTTCCAACCTC GGCTCAACTTTCTACTCCCTTCACCTCGAATTCGTCAGTGTCGGAAGTACGATAATTCCGTTCACCGACGCTACGCCCGCAGGCTCCACCGATGGGAACA TCATCATCGACTCTGGGACGACATTGATTATCGTGCCTACCCAATTCCTCTCCGAATTTACCACCGCACTCGAGGCACTAGTGACTGGCGCAAACAGGAC CAGCGATCCCACCGGGACCCTCGACCTGTGCTACGTGATAGACCCAAAACTCACGATTCCTCCGGTCATCATGCATTTCAGAGGAGGTGACGTGGCGTTG ACCCAGGTCAACCTCTTCATGCCGATGAGCGAAACGGTGACGTGTCTTGCTTTCTACGGAAACAACTTTGTAAGCATCTATGGAAACGTGGCACAGCAGG ATTTTCTGGTCGGCTACGACCTTCAGAAGCGGACCGTGTCCTTCGAACCCGCTGACTGTACCAAAAACTGA
AA sequence Show only first row Show all	>Lus10002612 pacid=23168850 polypeptide=Lus10002612 locus=Lus10002612.g ID=Lus10002612.BGIv1.0 annot-version=v1.0 MASRVSSAFALAISLAIVVVVCTVDANGGGGYDGFSVSLIHRDSSSSPFYSPSETQSERAANVVRRSLDRVARFTDMSGIIEHTYDPNLAPTSPVAALVA NDGEYLMNISLGSPPFPVLAIADTGSDIIWVQCKPCTDCYKQKDPVFDPKFSSTYRPVPCASETCTLLADEGSFCAKHDDICQYQVTYGDGSNTEGDLAT ETLALGTTVTGVIAEFPSTLFGCGHKNKGTFSPNGSGIIGLGEGPASLITQLGPTIGGKFSYCMVPYGAAPATTSTMHFGKNAVVSGTKVVTTPLLSSNL GSTFYSLHLEFVSVGSTIIPFTDATPAGSTDGNIIIDSGTTLIIVPTQFLSEFTTALEALVTGANRTSDPTGTLDLCYVIDPKLTIPPVIMHFRGGDVAL TQVNLFMPMSETVTCLAFYGNNFVSIYGNVAQQDFLVGYDLQKRTVSFEPADCTKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002612 [exp]	0	1
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	2.6	0.9407
AT4G38080			hydroxyproline-rich glycoprote...		Lus10029845 [exp]	4.0	0.7716
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	5.1	0.8877
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	5.5	0.7719
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	6.2	0.8877
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	7.2	0.8877
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	7.3	0.7589
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	8.1	0.8877
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	8.8	0.8794
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	9.5	0.8619

Compare expression of checked genes

Lus10002612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.