Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 405 / 5e-139 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 394 / 1e-134 Eukaryotic aspartyl protease family protein (.1) AT2G35615 354 / 8e-119 Eukaryotic aspartyl protease family protein (.1) AT1G31450 346 / 2e-115 Eukaryotic aspartyl protease family protein (.1) AT2G28010 290 / 2e-94 Eukaryotic aspartyl protease family protein (.1) AT2G28030 276 / 6e-89 Eukaryotic aspartyl protease family protein (.1) AT2G28040 273 / 1e-87 Eukaryotic aspartyl protease family protein (.1) AT2G03200 243 / 3e-75 Eukaryotic aspartyl protease family protein (.1) AT2G28220 246 / 8e-74 Eukaryotic aspartyl protease family protein (.1) AT1G01300 207 / 3e-61 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024910 [exp] 557 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 555 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 553 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 545 / 0 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 533 / 0 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 522 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 518 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 516 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 490 / 9e-173 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 439 / 3e-152 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 397 / 1e-135 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 347 / 4e-116 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 254 / 8e-80 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 253 / 1e-79 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 217 / 4e-65 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 202 / 1e-59 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 194 / 2e-56 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 194 / 2e-56 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 191 / 1e-55 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002613 pacid=23168830 polypeptide=Lus10002613 locus=Lus10002613.g ID=Lus10002613.BGIv1.0 annot-version=v1.0 ATGGCTACTCGAGTCAAATTCGTATATTCTCTTGTGATTTCGATAGTCATGGTCTTGATTAGCGTTATTGACAGTACTTTCCTGGTCAATCCACGTAGCG AAGGATTTAGCATCAACGTGATGCATCGTGACTCGTCCAATTCACCTTTTTATAACCCTAGAGAGACACCATCCGAACGGATTGGGAATGCGGTTAAGCG GACCATGACCCGAGTAAACCGTTTTGCGAGCATGGTTCATGTCGATTCTCGAGCGAACTCTTCTTCGCTTAGCTCCCCCACCGCTCCTTTGATCCCCAAC GATGGCGAGTATCTCATGAACATCTCCCTAGGCTCGCCGCCTTTCCCAGTTCTAGCGATCGCCGACACTGGGAGCGACATTATATGGACGCAGTGCAAGC CGTGCACTGACTGTTACAAGCAAAATGCTCCCATCTTCGATCCCAAATCCTCGAGTACCTACAGACCGGTCCCGTGTTACTCCACCGCCTGTCTTTCACT CGTCGGCGACGGGAGTTTATGCTCACAGGACGGTCAGGCCTGCCAGTACCAAGTGACATATGGGGACAATTCCCACACGTCAGGAGATGTAGCAACTGAG ACGCTCACTCTGGGTCCCGCCTCAGGCGCCTACGTGGCGTTCCCCAATACTATGTTTGGGTGCGGCCACAACAACAAAGGAACTTTTAGCCCGACAGGTT CGGGCATCGTTGGGCTTGGAGGTGGGCCCGCTTCACTCATTACCCAACTCGGTAAAACCATCCAAGGTAAATTCTCCTACTGCATGGTCGAGTATTTCTT GCCCAACAAGCCAACTAGTACGATGCACTTCGGCCAAAACGCAGTCGTTTCAGGCCCCAATGTAGTTTCCACTCCTTTATTCTCCTCCCAACTCACCCCA ATTTTCTACATGGTTGAACTACATACCGTTAGCATTGGAGGTACCTCAATCCCTTTCGTCGGTACTCCCCTTTCGAGCTCGGGAAACATCATTGTCGATT CCGGGACCACACTGACGATCGTCCCCACCGATTTCCTCTCCAAATTCTCCACCGCTGTCGAGTCACTAGTCACGGGGACCAAGACTAGCGACCCGCAAGG TTTTCTGAGCCTGTGCTACGTTCTGGACTCGAAACTCAAAATCCCCCCGGTGACCATGCATTTCGGAGGAGGGGACGTGGTGCTGCAGGCGATCAACTTG TTCTTTCCGATGAGCGATACGGTGGTGTGCCTTGCATTCTACGGCAACGACGATATAAGCATTTATGGAAATGTGGCTCAACAGAACTTTCTTGTTGGGT TTGATGTTCAGAAGCAAACTGTGTCCTTCAAGCCTACGGATTGCACCAAGAATTAA
AA sequence Show only first row Show all	>Lus10002613 pacid=23168830 polypeptide=Lus10002613 locus=Lus10002613.g ID=Lus10002613.BGIv1.0 annot-version=v1.0 MATRVKFVYSLVISIVMVLISVIDSTFLVNPRSEGFSINVMHRDSSNSPFYNPRETPSERIGNAVKRTMTRVNRFASMVHVDSRANSSSLSSPTAPLIPN DGEYLMNISLGSPPFPVLAIADTGSDIIWTQCKPCTDCYKQNAPIFDPKSSSTYRPVPCYSTACLSLVGDGSLCSQDGQACQYQVTYGDNSHTSGDVATE TLTLGPASGAYVAFPNTMFGCGHNNKGTFSPTGSGIVGLGGGPASLITQLGKTIQGKFSYCMVEYFLPNKPTSTMHFGQNAVVSGPNVVSTPLFSSQLTP IFYMVELHTVSIGGTSIPFVGTPLSSSGNIIVDSGTTLTIVPTDFLSKFSTAVESLVTGTKTSDPQGFLSLCYVLDSKLKIPPVTMHFGGGDVVLQAINL FFPMSDTVVCLAFYGNDDISIYGNVAQQNFLVGFDVQKQTVSFKPTDCTKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	1.0	0.9220
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10025982 [exp]	4.5	0.7902
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	5.1	0.8969
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	7.5	0.8812
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	8.0	0.7366
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	8.7	0.8812
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	9.2	0.7736
					Lus10000400 [exp]	9.7	0.8812
					Lus10009372 [exp]	10.7	0.8812
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	11.5	0.8812

Compare expression of checked genes

Lus10002613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.