Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62800 143 / 2e-38 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT2G28380 90 / 3e-19 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 85 / 8e-18 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 85 / 1e-17 DRB5 dsRNA-binding protein 5 (.1) AT1G09700 67 / 8e-12 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020274 [exp] 160 / 4e-47 ND / Lus10003362 [exp] 90 / 2e-20 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10032007 [exp] 87 / 4e-18 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10035176 [exp] 86 / 7e-18 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 86 / 2e-17 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 85 / 4e-17 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10021471 [exp] 79 / 1e-15 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10008862 [exp] 65 / 7e-11 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 64 / 2e-10 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G037900 [exp] 154 / 4e-40 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 137 / 9e-37 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.013G061500 [exp] 137 / 3e-35 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 127 / 9e-33 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038100 [exp] 92 / 9e-22 AT3G62800 66 / 4e-13 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 91 / 2e-19 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.017G063700 [exp] 88 / 2e-18 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 87 / 5e-18 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.005G045700 [exp] 82 / 2e-16 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 81 / 4e-16 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10002619 pacid=23168846 polypeptide=Lus10002619 locus=Lus10002619.g ID=Lus10002619.BGIv1.0 annot-version=v1.0 ATGTCGAAATCGGCGCTGAACGAGCTCTGTCAGCGCAACAAATGGCCGCCAGCGGCCTACTGCACCGTCAAGGCCGGCTTAGACCACGCCCCGAGGTTCA ACGCCACCGTCACTGTCAACGGCGCAACATTTGAGTCGGAATTGCCAGCTAAGTCGGCGAAGGAAGCTCATGCTGACGCCGCCAGAGTCGCATTGCTTCA ACTCTCTGCCGCCGCGGCCGCAGCTCCAGCTCCTCCTCCGCCGTCGTCGGGTACACTACACATGTACAAAAACAACTTGCAGACATATGCTCAAAGGAGA AACCTCGCACTTCCCGTGTATGCTCATGAAAAAGACGGCCCTCCTCATGCTAGTCGATTTAGTTGCTCAGTCACGATCGGTGGCCAAATCTACAGAAGCG AGGAGTCCTTCCCTACGGTGAAGGAAGCTGAGAATTCCGCTGCCAAGGCTGCATTAGCAGCGTTACAACCGGGCGGTGGAGAGGAAGAACCAGTCTACAA GAGCCTTCTACAAGAAAGAACTCAGAAAAATGGCGGCGCTCTCCCTTGCTACGAGACGAGGATGATCGGTCGAAATCATCAACCTGCTTTTGTATCAACG GTAACTGTGGAAGGGCAGGTTTTTTCAGGTCTCGAATCTAAAACGAAGAAGCTGGCGGAAATGAGTGCTGCCAAGGTTGCTTATACTCTTCTTACAGAAG GTTATAGAGAGGATGTTCGATCTCATTTGCATATGTCTTCTTGGTTAGACAACTCGAATCGGAGCTCTGATCAACTCGTTCATCATCAGTACGTTCCTCC TCAACCGTCCATGCCAATCAAACAAATGGACTCCATGGGCAACTCGAGTGGGAGCAAAAGAAAACAAGAGCCTCGCTTCCCATTTCCGAGTAACTCAATT CTTCTCGAGCATCTTCATCGGCATATCCAGTCTGAACGTGCTGCATCATCTGAAAAAGCAGTTATGGAGTCCTATGTTACAAATCCCAGTTCGGGAATCG ACAGTGTGATCCTAAAGCCTCATGCTTTGCCTCCTCCAGGCGGTCCAGTTGCATCTCCCATTAGGGTTCCTCAACTGATCCCAATTTCACCATCCCAAAT ATGCACACCTTCAGCAACACATGAAGCTTCCGATTTGAGTGTCAAATACCATAACGAAGGGACTTCCGAGATCGTGATCACAGGCACTGAGCCATCTCTT ACCCAGCCCAGTTCGAAAATCGACAGTGTCCTCGTAAACCCTCCAATTGGTCAAGCCTCGTCCTCCACTAATGGAGGTATAAGTTCCAGTCTCCAACGTC TTATCGGAACCAGCATCCAACAGCCGAACAGGATCGTGGTTCATCCTCGAAATTTCAGTGTCGCTTACCCTAATGACAGCAACGTGCTACCGATCAGCGA TGATGATTGGGTCGCTGTCAAGAGCTCCAAGCTTGCTTGA
AA sequence Show only first row Show all	>Lus10002619 pacid=23168846 polypeptide=Lus10002619 locus=Lus10002619.g ID=Lus10002619.BGIv1.0 annot-version=v1.0 MSKSALNELCQRNKWPPAAYCTVKAGLDHAPRFNATVTVNGATFESELPAKSAKEAHADAARVALLQLSAAAAAAPAPPPPSSGTLHMYKNNLQTYAQRR NLALPVYAHEKDGPPHASRFSCSVTIGGQIYRSEESFPTVKEAENSAAKAALAALQPGGGEEEPVYKSLLQERTQKNGGALPCYETRMIGRNHQPAFVST VTVEGQVFSGLESKTKKLAEMSAAKVAYTLLTEGYREDVRSHLHMSSWLDNSNRSSDQLVHHQYVPPQPSMPIKQMDSMGNSSGSKRKQEPRFPFPSNSI LLEHLHRHIQSERAASSEKAVMESYVTNPSSGIDSVILKPHALPPPGGPVASPIRVPQLIPISPSQICTPSATHEASDLSVKYHNEGTSEIVITGTEPSL TQPSSKIDSVLVNPPIGQASSSTNGGISSSLQRLIGTSIQQPNRIVVHPRNFSVAYPNDSNVLPISDDDWVAVKSSKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Lus10002619 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	1.7	0.8157
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	17.8	0.7724
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	17.8	0.7809
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	19.3	0.7905
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	22.4	0.7191
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	22.8	0.7575
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	22.9	0.7661
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	23.6	0.7449
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	27.1	0.7312
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	28.0	0.7240

Compare expression of checked genes

Lus10002619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.