Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17920 1400 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) AT3G03780 1384 / 0 ATMS2 methionine synthase 2 (.1.2.3) AT5G20980 1279 / 0 ATMS3 methionine synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020273 [exp] 1530 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10008422 [exp] 1344 / 0 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10003363 [exp] 1334 / 0 AT5G17920 1384 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061800 [exp] 1413 / 0 AT5G17920 1440 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.019G038268 [exp] 1409 / 0 AT5G17920 1454 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.004G190900 [exp] 1388 / 0 AT5G17920 1401 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.009G152800 [exp] 1375 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01717 [flax] [poplar] Meth_synt_2 Cobalamin-independent synthase, Catalytic domain CL0160 [flax] [poplar] Methionine_synt PF08267 [flax] [poplar] Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002620 pacid=23168831 polypeptide=Lus10002620 locus=Lus10002620.g ID=Lus10002620.BGIv1.0 annot-version=v1.0 ATGGCTTCCCACATTGTTGGATATCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTCGCTTTGGAATCCTTCTGGGATGGCAAGAGCAGTGCTGAGGATT TGAAGAAGGTATCAGCTGACCTGAGGGCATCCATCTGGAAGCAGATGTCTGATGCTGGAATCAAGTACATCCCCAGCAACACTTTCTCATACTACGACCA GGTGCTCGACACCACCGCCATGCTCGGTGCTGTCCCACCCAGGTACGGGTGGAACGGTGGTGAGATCGGGTTCGATGTGTTCTTCTCCATGGCTAGGGGT AACGCCTCCGTTCCTGCTATGGAAATGACCAAGTGGTTCGACACCAACTACCATTACATTGTCCCCGAGTTGGGCCCAGAGGTTGCTTTCTCATACGCTT CCCACAAGGCTGTGAATGAGTACAAGGAGGCCAAGGCGCTCGGAGTTGAGACCGTGCCAGTACTTGTTGGTCCTGTGTCCTACTTATTGCTATCCAAGCC TGCCAAGGGTGTTGAGAAGAGCTTCTCTCTTCTATCCCTCATTGACAAAATCCTCCCTGTTTACAAGGAGGTTATCTCAGAGCTTAAGGCTGCTGGTGCT TCATGGATTCAGCTCGATGAGCCCACTCTTGTGATGGATCTTGACTCTCACAAGTTGAGCGCATTCACTGATGCCTACTCTAAGTTGGAGTCGACTCTAT CCGGCTTGAACGTCCTCATCGAGACCTACTTCGCAGATATCCCTGCTGAGGCATTCAAGACCCTCACCTCTTTGAAGGGTGTCTCCGCTTATGGCCTTGA CTTGGTTCGTGGAACCAAGACTATTGACTTGGTCAAGTCTGAGTTCCCCAAGGGCAAGTACCTCTTCGCTGGTTTGGTTGATGGAAGAAACATCTGGGCT AATGATCTTGCTGCTTCTCTTAGCACCTTGGGAGCTCTTGAGAGCATCGTCGGCAAAGACAAGCTTGTCGTGTCTACTTCATGCTCGCTCATGCACACTG CTGTCGATCTCATCAACGAGACCAAGTTGGACGACGAGATCAAGTCATGGCTCGCATTTGCTGCCCAGAAGGTCATTGAAGTCAACGCTTTGGCCAAGGC CTTCGCCGGTCAGAAGGATGAGTCCTTCTTCTCTGCTAATGCTGCTGCCCTTGCGTCGAGGAAATCATCCCCCAGGGTGAACAACGAGGCTGTTCAGAAG GCTGCTGCTGGTTTGAAGGGCTCTGAGCACCGCCGTGCTACCAATGTCACCTCCAGGTTGGATGCTCAGCAGAAGAAGCTTAACCTGCCAATCCTTCCCA CCACTACTATTGGATCCTTCCCACAGACCGTTGAGCTCAGGAGGGTTCGTCGTGAGTACAAGGCCAAGAAGATCTCAGCTGAGGACTATGACAAGGCCAT CAAGGAGGAAATCAGCAAGGTCGTCAAGCTTCAAGAGGAGCTTGACATCGATGTCTTGGTCCACGGAGAGCCCGAGAGGAACGACATGGTTGAGTACTTC GGTGAGCAGCTGTCTGGTTTCGCCTTCTCCGCCAACGGATGGGTGCAATCCTATGGTTCTCGCTGCGTGAAGCCCCCGATCATCTACGGTGATGTCAGCC GCCCCAACCCAATGACCGTGTACTGGTCATCTGCTGCTCAGAGCATGACTTCCCGCCCCATGAAGGGTATGCTTACCGGCCCCGTCACCATCCTCAACTG GTCCTTCGTCCGTAACGACCAGCCCAGATTCGAGACCTGCTACCAGATCGCTTTGGCCATCAAGGACGAGGTCGAGGATCTCGAGAAGGCCGGCATCAAC GTCATCCAGATCGACGAAGCTGCCTTGCGAGAGGGTCTTCCTCTCAGGAAGTCCGAGCAAGCTTTCTACTTGGAATGGGCTGTCCACTCCTTCAGGATCA CCAACGTCGGCGTCCAAGACACCACCCAGATCCACACCCACATGTGCTACTCCCACTTCAACGACATCATCCACTCCATCATCGACATGGACGCCGACGT GATCACCATCGAGAACTCCCGCTCCGACGAGAAGCTCCTGTCCGTTTTCCGTGAGGGAGTCAAGTACGGAGCAGGTATCGGCCCCGGTGTGTACGACATC CACTCCCCGAGAATACCGTCCACCGAGGAGATTGCCGACAGGGTCAACAAGATGCTCGCGGTGCTCGAGAAGAACGTCCTGTGGGTCAACCCCGACTGCG GTCTCAAGACCCGTAAGTACGCCGAGGTCAAGCCTGCTCTCCAGGCCATGGTTGAAGCCGCCAAACTCCTCCGCAAGCAGCTCGGCAGCGCCTAA
AA sequence Show only first row Show all	>Lus10002620 pacid=23168831 polypeptide=Lus10002620 locus=Lus10002620.g ID=Lus10002620.BGIv1.0 annot-version=v1.0 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLKKVSADLRASIWKQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWNGGEIGFDVFFSMARG NASVPAMEMTKWFDTNYHYIVPELGPEVAFSYASHKAVNEYKEAKALGVETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKILPVYKEVISELKAAGA SWIQLDEPTLVMDLDSHKLSAFTDAYSKLESTLSGLNVLIETYFADIPAEAFKTLTSLKGVSAYGLDLVRGTKTIDLVKSEFPKGKYLFAGLVDGRNIWA NDLAASLSTLGALESIVGKDKLVVSTSCSLMHTAVDLINETKLDDEIKSWLAFAAQKVIEVNALAKAFAGQKDESFFSANAAALASRKSSPRVNNEAVQK AAAGLKGSEHRRATNVTSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISAEDYDKAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYF GEQLSGFAFSANGWVQSYGSRCVKPPIIYGDVSRPNPMTVYWSSAAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIN VIQIDEAALREGLPLRKSEQAFYLEWAVHSFRITNVGVQDTTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI HSPRIPSTEEIADRVNKMLAVLEKNVLWVNPDCGLKTRKYAEVKPALQAMVEAAKLLRKQLGSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	1.0	0.9818
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026656 [exp]	2.0	0.9680
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	2.8	0.9636
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10027078 [exp]	3.5	0.9674
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10033156 [exp]	6.0	0.9577
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	7.4	0.9601
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	9.4	0.9439
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	9.9	0.9350
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	11.7	0.9566
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	14.1	0.9392

Compare expression of checked genes

Lus10002620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.