Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 92 / 9e-20 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT3G09550 83 / 4e-17 Ankyrin repeat family protein (.1) AT2G03430 81 / 4e-17 Ankyrin repeat family protein (.1) AT3G12360 73 / 8e-14 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G40160 70 / 4e-13 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT4G32500 70 / 9e-13 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT1G07710 69 / 2e-12 Ankyrin repeat family protein (.1) AT5G14230 69 / 3e-12 unknown protein AT5G53470 67 / 4e-12 ACBP1 acyl-CoA binding protein 1 (.1) AT5G54620 67 / 5e-12 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020272 [exp] 706 / 0 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10010667 [exp] 255 / 3e-82 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10007432 [exp] 226 / 9e-71 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10003748 [exp] 147 / 2e-39 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10028039 [exp] 86 / 3e-18 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10036990 [exp] 84 / 3e-17 AT5G14230 510 / 5e-174 unknown protein Lus10039491 [exp] 80 / 8e-16 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024136 [exp] 80 / 1e-15 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003986 [exp] 77 / 4e-15 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 498 / 1e-174 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 153 / 1e-41 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 135 / 3e-35 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 86 / 1e-17 AT5G14230 975 / 0.0 unknown protein Potri.001G029600 [exp] 84 / 6e-17 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.006G214600 [exp] 77 / 3e-15 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 77 / 4e-15 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 76 / 2e-14 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 75 / 2e-14 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 75 / 2e-14 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10002621 pacid=23168823 polypeptide=Lus10002621 locus=Lus10002621.g ID=Lus10002621.BGIv1.0 annot-version=v1.0 ATGGTCGTCGACGGCGCCGCCGTCGACGAGATCCGAGAGGTTCTTGAACGGAGCGATCCATCGTGGAAGGCGGCGGACGCCGTGGATCACCAAGGCGAGC CGCTGCTCCATATCGCGATTGCTCGAGGGAGGGCGGATTTGGTTCAGCTGCTTTTGGAGTTCGGACCGGATGTCGAGTCTCGGGGCCGATCCGGGTCGAC CCCGTTGGAGGTCGTATCTGGATCGGGCGAGTCATTGATTTCTGAGCTTTTGTTGGCTCATGGGGCCAGCACTGAGAGGTCGAAGGCCTCCTCGTGGGGG GCCATCCATCTAGCTGCAGGTGGGGGCCACATGGATGTCATGAGGCTTCTTTTAGCTAAAGGAGCTTGTGTTGACTCGTTGACTAAAGATGGTAACACCG CGCTCCACATTGCCGTGGAGCAACGACGACGCGACTGTGCTCGGTTGTTGATTAGAGGCGGAGCGCGTGTAGATTTACGGAACGGGAGGGACGGAGACAC GCCTCTACATGTTGCGGCGAGGATCGGCGACGAGAATATGGTGAGGGTATTGTTGTCAAAAGGTGGGGCAAATAAGGGAATTCGGAACAGAAACTGCCAT ACGGCTTACGATATTGCGATGGAGTACGGTCACTTGCGACTCTTCGACGCGTTGAAGCTCGGGGACAACTTGTGTGCTGCGGCGCGTAAGGGTGATGTGA GGGAGATCCAACGGTTGACAGAAGGCGGGGCGGCAGTCAACGGCCGAGATCAACACGGGTGGACTGCACTCCATAGGGCAGCATTCAAGGGCAAAAGCGA CGCGGTACGAACGCTCCTCGAAAAAGGGATCAACATCGATTCGAAGGACGAGGACGGGTACACCGCGCTACATTGCGCGGTGGAAACCGGCCAGGCGGAC GTGATCGAGTTGTTAGTCAAGAGAAACATCGACGTGGATGCTCGCACGAACAAAGGCGTCAGCGCACTACAAATCGCGGAGTCGCTACACTACTCGGGGA TCACGCGAGTTCTAATCAACGGCGGCGCATCGAGGGAAGACGCAAACGACCATACTAAGGATCCATCGAGACATGTGTCGTGCAAGAACGGGCTATTGTC GGCTCGAAAAGAAGATGAAAAGACAACAAAGAAAAGACCGGCGAGGGCAAGAGCTACACAGAATAATCGGTACGATCGATCATCACCCGCACTCGCCGTG TTGTAG
AA sequence Show only first row Show all	>Lus10002621 pacid=23168823 polypeptide=Lus10002621 locus=Lus10002621.g ID=Lus10002621.BGIv1.0 annot-version=v1.0 MVVDGAAVDEIREVLERSDPSWKAADAVDHQGEPLLHIAIARGRADLVQLLLEFGPDVESRGRSGSTPLEVVSGSGESLISELLLAHGASTERSKASSWG AIHLAAGGGHMDVMRLLLAKGACVDSLTKDGNTALHIAVEQRRRDCARLLIRGGARVDLRNGRDGDTPLHVAARIGDENMVRVLLSKGGANKGIRNRNCH TAYDIAMEYGHLRLFDALKLGDNLCAAARKGDVREIQRLTEGGAAVNGRDQHGWTALHRAAFKGKSDAVRTLLEKGINIDSKDEDGYTALHCAVETGQAD VIELLVKRNIDVDARTNKGVSALQIAESLHYSGITRVLINGGASREDANDHTKDPSRHVSCKNGLLSARKEDEKTTKKRPARARATQNNRYDRSSPALAV L

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	0	1
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	2.0	0.7585
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	8.6	0.7246
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	9.8	0.7102
					Lus10039943 [exp]	10.6	0.7091
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	11.0	0.6929
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	21.4	0.6408
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	23.1	0.6378
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	23.5	0.6395
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	24.9	0.6896
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	26.2	0.5846

Compare expression of checked genes

Lus10002621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.