Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55000 372 / 5e-130 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) AT3G09030 53 / 1e-07 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020270 [exp] 448 / 9e-157 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038400 [exp] 422 / 5e-150 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 407 / 5e-144 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.003G129300 [exp] 50 / 9e-07 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.018G107600 [exp] 48 / 5e-06 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 48 / 5e-06 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 41 / 0.001 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies) CL0033 [flax] [poplar] POZ PF02214 [flax] [poplar] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10002622 pacid=23168842 polypeptide=Lus10002622 locus=Lus10002622.g ID=Lus10002622.BGIv1.0 annot-version=v1.0 ATGACGAAGGAGCCTGGCTCTTCTTCCATCGTCCGCCTCAACATCGGAGGAAAGAAATTCTCCACTACTGTGGACACTCTGACGAACCGGGAGCCGCAGT CGATGCTCTACGCGATGTTCAGTGGCCGGCATACTGTGTGTGAGGATCCTGTCTCGGGAGGCGTCTTTGTGGATAGGGATGGCAAGCATTTCAGGCATGT TCTGAACTGGTTGAGGGACGGAGTAGTTCCGAATCTGACTGATGCTCAGTATTCGGAGCTTATGCGGGAGGCTGAATACTATCAGCTACTTGAGCTTATA GAGGCGATCAATTCTGCCGTTAACCAGAGGAAGCCAGGCGATGAGCTGGATACGGAATTGACTCGAACGGATATCATCAAGTGTACACAGTCTGAGAAGG TCCGGTTTCGTGGGGTTAATCTTTCTGGCCTTGACCTCTCCAAATTGGACCTATCCTTTGTTGACTTCAGTTATGCTAGTCTTCGAAATGTCTTCTTCTC GCGTGCCAATCTTCAGTGTGCTAAATTCCGGGATGTGGATGCCGAGGGTTCCATATTTCATAATGCAACCCTACGAGAATGCGAATTCACTGGTGCAAAT CTTCGCGGAGCTTTATTAGCTGGTGCTAATCTTCAGAGCGCAAATATGCAAGATGCTTGTTTGGTAGATTGCAGCTTTTGTGGAGCCAATCTGCGATCAG CTCACTTACAGACGGCCGATCTCACCAATGCCAATTTGGAAGGAGCAAACCTAGAAGGAGCCAATCTGAAGGGGGCGAAGCTGAACAACGCCAACTTGAA GGGCGCAAACCTTCAACGCGCCTATCTTCGACAAGTTAATCTCCAAAACGCCGATCTGGACGGTGCAAAGCTTGACGGTGCGAACTTGGTCGGAGCAATT CGATGA
AA sequence Show only first row Show all	>Lus10002622 pacid=23168842 polypeptide=Lus10002622 locus=Lus10002622.g ID=Lus10002622.BGIv1.0 annot-version=v1.0 MTKEPGSSSIVRLNIGGKKFSTTVDTLTNREPQSMLYAMFSGRHTVCEDPVSGGVFVDRDGKHFRHVLNWLRDGVVPNLTDAQYSELMREAEYYQLLELI EAINSAVNQRKPGDELDTELTRTDIIKCTQSEKVRFRGVNLSGLDLSKLDLSFVDFSYASLRNVFFSRANLQCAKFRDVDAEGSIFHNATLRECEFTGAN LRGALLAGANLQSANMQDACLVDCSFCGANLRSAHLQTADLTNANLEGANLEGANLKGAKLNNANLKGANLQRAYLRQVNLQNADLDGAKLDGANLVGAI R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10002622 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	13.0	0.8059
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	16.8	0.8185
AT5G51170			unknown protein		Lus10035151 [exp]	38.8	0.7694
AT3G19980		STPP, ATFYPP3, ...	SERINE/THREONINE PROTEIN PHOSP...		Lus10013456 [exp]	41.6	0.7524
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	101.1	0.7456
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	176.6	0.7170
AT5G22280			unknown protein		Lus10016983 [exp]	214.2	0.7088
					Lus10016106 [exp]	220.7	0.7068

Compare expression of checked genes

Lus10002622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.