Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03773 166 / 1e-53 HSP20-like chaperones superfamily protein (.1.2) AT4G02450 110 / 1e-30 HSP20-like chaperones superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020270 [exp] 266 / 3e-88 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10010669 [exp] 191 / 3e-63 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2) Lus10024119 [exp] 114 / 1e-33 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10000340 [exp] 114 / 5e-32 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10026136 [exp] 114 / 8e-32 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10008680 [exp] 115 / 3e-31 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062600 [exp] 180 / 3e-59 AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2) Potri.019G038550 [exp] 176 / 1e-57 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 111 / 7e-32 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.005G199700 [exp] 110 / 2e-31 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10002623 pacid=23168845 polypeptide=Lus10002623 locus=Lus10002623.g ID=Lus10002623.BGIv1.0 annot-version=v1.0 ATGGCGACGAGTTTTCTTCAATCTCCGGCCACAGCTCCGGCATCCGATAACAGCCATGAAGCAAGCCGGAATCCAGAAGTCCTCTGGGCGCAGAAATCCG GCAAGGTGTACTTAACGATCGCCCTGCCGGACGCCAAGGATGTATCGGTGAAATGCGAGTCCGATGGCTTGTTCACCTTCTCAGCTCGCGGGATTCACGG CGAGTCCTACGAGCTCAGTTTGCATCTCTACGCTCCGATTCTCCCCGAGACTTGTAAGGCGAATTGTGGATTGAGGAACATAATCTGCTCGATTCGGAAA GCGGAGAAGAAATGGTGGGAGAGGCTGTTGAAGACTGGTGAGAAGCCTGCACCTTACATTAAGGTTGATTGGAGCAAGTGGATCGACGAGGATGATGAGG ATTCAGCTTGTAAGTAG
AA sequence Show only first row Show all	>Lus10002623 pacid=23168845 polypeptide=Lus10002623 locus=Lus10002623.g ID=Lus10002623.BGIv1.0 annot-version=v1.0 MATSFLQSPATAPASDNSHEASRNPEVLWAQKSGKVYLTIALPDAKDVSVKCESDGLFTFSARGIHGESYELSLHLYAPILPETCKANCGLRNIICSIRK AEKKWWERLLKTGEKPAPYIKVDWSKWIDEDDEDSACK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	0	1
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	1.0	0.9176
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	5.7	0.9176
AT1G11655			unknown protein		Lus10001141 [exp]	5.9	0.8995
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	8.1	0.8987
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	11.5	0.9087
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	12.7	0.8985
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	13.5	0.8817
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	16.2	0.8828
AT4G23885			unknown protein		Lus10001827 [exp]	16.3	0.8801
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	17.0	0.8981

Compare expression of checked genes

Lus10002623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.