Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13460 398 / 4e-131 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G55500 375 / 5e-123 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G03950 326 / 3e-106 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT5G61020 325 / 5e-105 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13060 298 / 7e-93 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G17330 265 / 1e-81 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 264 / 9e-80 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G79270 249 / 2e-75 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT5G58190 242 / 9e-73 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G27960 241 / 4e-72 ECT9 evolutionarily conserved C-terminal region 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020269 [exp] 1047 / 0 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10033335 [exp] 289 / 5e-89 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 288 / 7e-89 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 265 / 1e-80 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 265 / 3e-80 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10015778 [exp] 254 / 4e-79 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037364 [exp] 255 / 5e-77 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 254 / 2e-75 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10035790 [exp] 259 / 3e-75 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034300 [exp] 436 / 2e-147 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G002000 [exp] 395 / 2e-130 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 390 / 1e-128 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.007G002800 [exp] 301 / 1e-93 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 296 / 6e-92 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.008G100200 [exp] 285 / 7e-87 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.001G056100 [exp] 278 / 1e-85 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.010G175500 [exp] 274 / 4e-84 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.010G152300 [exp] 276 / 3e-83 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G080800 [exp] 268 / 1e-81 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10002624 pacid=23168822 polypeptide=Lus10002624 locus=Lus10002624.g ID=Lus10002624.BGIv1.0 annot-version=v1.0 ATGGCGGTTGTCTCTTCTGGCTCTGATCGTATCCTTTCCGAATTCCCCGAGCTCGAGACTGCAGGCTTATTGGAGAACCTGTCGCTGGGCGGTCAGGCGA AGACTGCTGCTGATGGCATGGAGCCTGCAAAGAAGCTCACAACTAGTCAATATGGAACGAATGATTTGGCTAATAATAATCAAGGGATGTCGTTAACCCG CTCTACGACCCCTCTTGTTGACCCAAACGCGCAGAACTATTTTCCTAATGGATACCCACCGTCGCCTGCGTACTATTACGGAGGTTATTTTGGGCATGGT AATGAGTGGAACGACTACGGTAGAGGGCTTGAGATGTCTCATGGTGGTTTTGGTGAAGGAGATGCGGCAGGGTTTCACCCCCAAGGTTATCCTCTGTATT CCCCGACAAATGGTTCCGGCCAAACGAATGACAGTCAGTTGTATGGAACGCAGCAGTACCAGTATCCATTCTATCAGCTCCCTAACTCAAACTCTAATGG CTCTCTTAACCAAGTGAGCCCTTCGCCAGGGCAGACTGCAACTGCAGGCTTGGCTGAGAAAGGACCTCTGCCTGCTGGAACTACCCCTGGGAATATGGGG AGTTTGAACAAGAATAATGGATTGAAGTCATTCAGGCCAAGCAATCAGAACTCTTACTCGAACACAAATGGTGCCTCCAAAAGGGGAAGTTCTGGGACGA CATACCAGCCGTCAAGTTATCAGGATCCTAGATTTTCGTACGATGGATTTCAATCAACATTCCCTTGGGTTGATGCTTCCATGTATTCTGGTGGTGCAAC CGGGCACCTTGGTGGTGGTGGTGGTTTTTCCTCTTCGCTGAATTCACATCAATCTAGGCCTGTACCTAGTTACGGACAGGGTTCTGGTTATATGATGTAC CCGAACAACAGAATGTATGACCATTATGGTAACAGAGGCAGTGGATATTCTTTCGGTTATAACAATAGTTGGACTAATGGACGCGGATGGATGACTGTTG ACAAGTACAAATCAAAAGGCCGTGGCTATGGAAATGAGAACATGGACGGGTCAGGCGAGCTTAACAAAGGCCCTAGGGCCAAGAGTTTTAAGCTTCAGAA AGATCTTGGTGCTGAAACTACTCTGGAAGGGCAGAACAATTCTTCAACAGAGAACAAGGAGGAGAATCCAACTGAAATTCTGGACCAGGGACAGTACAAC AAGGACGATTTCCCTGAAGATTATGCTGATGCCAAATTCTTTGTGATAAAATCATACAGCGAAGATGATGTCCATAAGAGCATCAAATATGGTGTTTGGA CTAGTACTCCAAATGGTAATAAGAAGCTTGATGCAGCTTACAGAGAGGCCAGTGCAAAGGCTGCTCGGTGCCCTGTATTTTTACTGTTCTCAGTGAACAC CAGTGGTCAATTTGTCGGTTTGGCCGAAATGACCGGACCAGTCGACTTCGATAAAACTGTCGAGTACTGGCAGCAAGACAAGTGGACCGGCTGCTTTGCT GTCAAGTGGCATATCATCAAGGATGTCCCGAACAGCACGTTGAGGCACATCACCCTCGAGAACAACGAAAACAAGCCTGTAACTAATAGTAGGGATACTC AAGAGATTCACATTGAGAAGGGCATTGAGGTTCTCAAAATCTTCAAGTCCTGCAAATCCAAGACTTCCATACTGAACGACTTTGGATTCTACGCTACCCG CGAAAAGATCATGCAGGAGAAGAGGGCCAAGCAAAAGATGCAGAAGCAGGTTAGGGTCAAATGA
AA sequence Show only first row Show all	>Lus10002624 pacid=23168822 polypeptide=Lus10002624 locus=Lus10002624.g ID=Lus10002624.BGIv1.0 annot-version=v1.0 MAVVSSGSDRILSEFPELETAGLLENLSLGGQAKTAADGMEPAKKLTTSQYGTNDLANNNQGMSLTRSTTPLVDPNAQNYFPNGYPPSPAYYYGGYFGHG NEWNDYGRGLEMSHGGFGEGDAAGFHPQGYPLYSPTNGSGQTNDSQLYGTQQYQYPFYQLPNSNSNGSLNQVSPSPGQTATAGLAEKGPLPAGTTPGNMG SLNKNNGLKSFRPSNQNSYSNTNGASKRGSSGTTYQPSSYQDPRFSYDGFQSTFPWVDASMYSGGATGHLGGGGGFSSSLNSHQSRPVPSYGQGSGYMMY PNNRMYDHYGNRGSGYSFGYNNSWTNGRGWMTVDKYKSKGRGYGNENMDGSGELNKGPRAKSFKLQKDLGAETTLEGQNNSSTENKEENPTEILDQGQYN KDDFPEDYADAKFFVIKSYSEDDVHKSIKYGVWTSTPNGNKKLDAAYREASAKAARCPVFLLFSVNTSGQFVGLAEMTGPVDFDKTVEYWQQDKWTGCFA VKWHIIKDVPNSTLRHITLENNENKPVTNSRDTQEIHIEKGIEVLKIFKSCKSKTSILNDFGFYATREKIMQEKRAKQKMQKQVRVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	0	1
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	1.7	0.9533
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	2.4	0.9565
AT1G50920			Nucleolar GTP-binding protein ...		Lus10002558 [exp]	3.0	0.9444
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	3.5	0.9585
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	5.0	0.9510
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	5.7	0.9423
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	6.6	0.9531
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	7.2	0.9423
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	8.8	0.9457
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	9.8	0.9485

Compare expression of checked genes

Lus10002624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.