Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03960 936 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 236 / 7e-71 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 218 / 5e-64 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 213 / 8e-62 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 203 / 3e-58 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 200 / 3e-57 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 181 / 2e-50 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 154 / 2e-40 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 153 / 3e-40 TCP-1/cpn60 chaperonin family protein (.1) AT4G08640 99 / 6e-24 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007430 [exp] 1053 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10010670 [exp] 1049 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 224 / 2e-66 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 218 / 6e-64 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 216 / 7e-63 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 211 / 5e-61 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 210 / 7e-61 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10021150 [exp] 207 / 7e-60 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 206 / 3e-59 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034200 [exp] 1001 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.013G058500 [exp] 991 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 237 / 4e-71 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 237 / 4e-71 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 227 / 2e-67 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 222 / 3e-65 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 219 / 2e-64 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 218 / 1e-63 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.018G138200 [exp] 203 / 3e-58 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 202 / 5e-58 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10002625 pacid=23168841 polypeptide=Lus10002625 locus=Lus10002625.g ID=Lus10002625.BGIv1.0 annot-version=v1.0 ATGGGGTTCCCAATGCAGCCGTATGGTGTACAGTCGATGTTGAAGGAAGGACACAAGCATCTCTCCGGCCTCGACGAAGCTGTCCTGAAGAATATTGACG CCTGCAAGCAGCTTTCCACCATCACCCGCACCTCTCTCGGCCCTAACGGTATGAATAAGATGGTGATAAATCATCTGGACAAGCTGTTTGTCACCAACGA TGCAGCAACCATAGTGAACGAGCTTGAAGTACAGCACCCCGCAGCGAAGATTCTGGTCTTGGCTGGGAAGGCTCAGCAGGAGGAGATCGGGGATGGAGCT AACTTGACAATATCATTCGCCGGTGAGCTGCTTCAGAATGCTGAAGAGCTTATTAGGATGGGACTGCACCCCAGTGACATTATCAGTGGGTACACTAAGG CCAGTGACAAGGGGATTGAGGTGTTGGGTGAACTGGTGGAGCCAGGCTCCGAAACGATGGATGTGAGGAATAAGGAAGAAGTTGTTTCGAGGATGAGAGC TGCTGTTGCTAGCAAACAGTTTGGCCAGGAAGATATTTTGTGTAGTCTTATTGCTGATGCCTGCGTACAAGTTTGTCCCAAGAACCCGGCGAGCTTCAAT GTGGATAACATCCGTGTTGCAAAGCTCGTGGGAGGAGGTTTGCGCAATAGTGCCATAGTTCGTGGAATGGTCTTGAAAAGTGATGCTGTTGGCACAATGA AGAAAATAGAGAAGGCCAAGGTTGCTGTATTTGTTGGTGGCGTTGATACTTCTGCAACTGAAACCAAAGGAACTGTTCTAATTAACAATGCTGAGCAGCT ACAAAACTATGCAAAAACCGAGGAAGCTAAGGTTGAGGAGCTTATCAAGGCAGTAGCTGATTCCGGTGCTAAAGTTATTGTCAGTGGTGGTTCAGTCGGA GAGATGGCCCTACATTTCTGTGAACGTTACAAGCTTATGGTCTTGAAGATCAGCTCAAAATTTGAATTGAGAAGATTTTGTTGCACAACTGGTGCTATTG CAATGTTGAAGCTTAGTCCGCCAAATCCAGATGACTTGGGATACGTAGATTCTGTTTCAGTGGAAGAAATCGGTGGTTCTAGAGTCACTGTCGTGAGAAA TGAAGAAGGTGGTAACTCAATCAGTACTGTTGTCTTGCGTGGAAGCACTGAAAGTATATTGGATGATCTCGAAAGAGCAGTTGATGATGGAGTCAATACC TACAAGGCAATGTGCAGAGACAGCCGCACAGTACCCGGAGCCGCTGCCACTGAAATCGAGCTGGCTAGAAGAATAAAGGAATTCTCATTCAAAGAAACAG GATTGGACCAGTACGCAATCGCTAAATTTGCAGAGAGCTTTGAAATGGTTCCGAATACACTTGCGGAGAACGCAGGTCTCGACGCGATGCAGATAATATC GTCCCTCTACGCCGAACATGCATCCGGCAACGCCAAAGTAGGCATCGACTTGGAGGAAGGTGTTTGCAAGGATGTCATGAAGACGAATGTTTGGGACCTC CACGTCACAAAGTTCTTCGCCCTCAAGTATGCTGCTGACGCTGCCTGCACCGTGCTGCGAGTAGACCAGATTATAATGTCGAAACAGGCAGGCGGTCCGA GGAGAGACCAACAGCCAGCAGGAGCAGGAATGGATGAGGATTAG
AA sequence Show only first row Show all	>Lus10002625 pacid=23168841 polypeptide=Lus10002625 locus=Lus10002625.g ID=Lus10002625.BGIv1.0 annot-version=v1.0 MGFPMQPYGVQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGA NLTISFAGELLQNAEELIRMGLHPSDIISGYTKASDKGIEVLGELVEPGSETMDVRNKEEVVSRMRAAVASKQFGQEDILCSLIADACVQVCPKNPASFN VDNIRVAKLVGGGLRNSAIVRGMVLKSDAVGTMKKIEKAKVAVFVGGVDTSATETKGTVLINNAEQLQNYAKTEEAKVEELIKAVADSGAKVIVSGGSVG EMALHFCERYKLMVLKISSKFELRRFCCTTGAIAMLKLSPPNPDDLGYVDSVSVEEIGGSRVTVVRNEEGGNSISTVVLRGSTESILDDLERAVDDGVNT YKAMCRDSRTVPGAAATEIELARRIKEFSFKETGLDQYAIAKFAESFEMVPNTLAENAGLDAMQIISSLYAEHASGNAKVGIDLEEGVCKDVMKTNVWDL HVTKFFALKYAADAACTVLRVDQIIMSKQAGGPRRDQQPAGAGMDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	3.0	0.9542
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	3.7	0.9456
AT3G12870			unknown protein		Lus10031198 [exp]	6.2	0.9371
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	7.4	0.9167
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	8.9	0.9094
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	10.2	0.9195
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	11.7	0.9327
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	12.8	0.9124
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	13.0	0.8864
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	13.5	0.9030

Compare expression of checked genes

Lus10002625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.