Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55370 223 / 5e-70 NDF5 NDH-dependent cyclic electron flow 5 (.1.2) AT1G64770 96 / 4e-22 PnsB2, NDH45, NDF2 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) AT4G23730 47 / 1e-05 Galactose mutarotase-like superfamily protein (.1) AT4G25900 46 / 2e-05 Galactose mutarotase-like superfamily protein (.1) AT3G61610 45 / 4e-05 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020267 [exp] 575 / 0 AT1G55370 234 / 2e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10010671 [exp] 99 / 8e-23 AT1G64770 413 / 1e-144 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10007429 [exp] 97 / 4e-22 AT1G64770 408 / 2e-142 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10005147 [exp] 50 / 8e-07 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 50 / 8e-07 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 47 / 2e-05 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 47 / 2e-05 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 44 / 0.0001 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 44 / 0.0002 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034000 [exp] 314 / 6e-105 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 120 / 5e-31 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.002G167200 [exp] 46 / 3e-05 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 42 / 0.0006 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 41 / 0.0008 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002626 pacid=23168849 polypeptide=Lus10002626 locus=Lus10002626.g ID=Lus10002626.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCGCTTTCTTCTCCACATTCAAAACCCTCAGTCTTCCCACTTATTCAGGCGTTCTTCTTCACCAGAGAAGAACCACCAAATCCTACGTGG CATTCCGGAACCAGGCAATCAATGTGGACTATTTAGAGCAAGAATTCGGCGGCCATGGAGTCAAGTTCCAGAGTTTGGAGGAAGACACCTGCTGCGTGGG GAAAATGAAGATGAGCAATGGAAGCTCTGCAACTTTCCTGCTCCCGCACGGTCTGATCACTTCCTACAAGGCTATGATGTGGCACGGCGGGACCATGGAG CTGATTCAGACCTCCGTCGACGGCGGCGGAAGAGGCGGTGGAGGTGATGTTAATGGTGGTGGTGCTGTGATCCAAGGCGGAGTTTCTTTGGCTGTTGAGT TGGCGGCGGTGAGCGGCGGCCATGGCGGCGGATATGGGGGGTTGGGTGATTGGGCTGTTGCTGATGTGAGAGGTGATCCTAGTGACTGCATTGAGGTTGA ACTGGTATGTACCAGTACACCAAACCAAATGGTTGATGCCAGATACACAATGACCATGGAACCAGACATGTTGAGCTCAGAGCTCAAGCTCACAAACCTA AACAAATCATCTTCAATCCAAATCACAGGCTCCATTCTAACCCATCTGACGGTGAGCACACCCGAAGCAACGACCGCCTGTGGACTCGAAGGGTCCACCT TCGTCGCGAGGCCAATGCTCCGGTCCAAATTTGCGATCATGCCTCCAGATTTCGTAGACGATCGCGACATGTTTGGGAACAGAACTTATCTGAAAGCAGC GACTGAAGAAGAAGGAACGGAAGGTGAAGAGTGTGATAGCTATAAGGTGCTGACTGATGAACTGTGCAGGGTTTACACCAGTGCTGCTAGGAACTTCACG CTCCTCGACCGGGGAAGAAGGAACTCAGTGGTGGTTGGAAGAGAAGGGTTTGAAGAACTGTATATCTACAGTCCAGGATCAATCCATGAGAGCTATGGCA AGTATTCTTACATTGGTGTTGGCCAATCTGCTTTGGTAAAGCCTCTTGTTCTTGGTCCTGGACAACAATGGAGTGGCAAGCAGCATCTTCATAACCCTAA TCTGTGA
AA sequence Show only first row Show all	>Lus10002626 pacid=23168849 polypeptide=Lus10002626 locus=Lus10002626.g ID=Lus10002626.BGIv1.0 annot-version=v1.0 MAATAFFSTFKTLSLPTYSGVLLHQRRTTKSYVAFRNQAINVDYLEQEFGGHGVKFQSLEEDTCCVGKMKMSNGSSATFLLPHGLITSYKAMMWHGGTME LIQTSVDGGGRGGGGDVNGGGAVIQGGVSLAVELAAVSGGHGGGYGGLGDWAVADVRGDPSDCIEVELVCTSTPNQMVDARYTMTMEPDMLSSELKLTNL NKSSSIQITGSILTHLTVSTPEATTACGLEGSTFVARPMLRSKFAIMPPDFVDDRDMFGNRTYLKAATEEEGTEGEECDSYKVLTDELCRVYTSAARNFT LLDRGRRNSVVVGREGFEELYIYSPGSIHESYGKYSYIGVGQSALVKPLVLGPGQQWSGKQHLHNPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	1.4	0.9115
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	3.7	0.8819
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	6.2	0.9036
AT1G21350			Thioredoxin superfamily protei...		Lus10028617 [exp]	10.6	0.8958
AT5G02160			unknown protein		Lus10024373 [exp]	11.7	0.8991
AT5G62960			unknown protein		Lus10039964 [exp]	12.2	0.9030
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	14.3	0.9059
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	15.0	0.8885
AT3G45050			unknown protein		Lus10041331 [exp]	23.1	0.8994
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	24.7	0.8784

Compare expression of checked genes

Lus10002626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.