Plant FIBer expression Database

Lus10002627 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54385 392 / 2e-130 ARM repeat superfamily protein (.1.2)
AT3G03970 276 / 9e-86 ARM repeat superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020266
[exp]
971 / 0 AT1G54385 402 / 4e-134 ARM repeat superfamily protein (.1.2)
Lus10010672
[exp]
521 / 5e-180 AT1G54385 556 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10007428
[exp]
506 / 5e-174 AT1G54385 549 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10043053
[exp]
43 / 0.0006 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058700
[exp]
490 / 6e-168 AT1G54385 599 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.019G033900
[exp]
488 / 9e-167 AT1G54385 608 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.011G136700
[exp]
53 / 4e-07 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10002627 pacid=23168826 polypeptide=Lus10002627 locus=Lus10002627.g ID=Lus10002627.BGIv1.0 annot-version=v1.0
ATGAATAGTAGGAACCGGAGTACGATACTGAATCGAGAACTATCGAATCTGGACAAAGATCTGAAGACTCGGAAATCAGCGATGAAGACATTGAGATCTT
ATGTAGAAACCATGGATTCCACTTCCATCCCGTTGTTTCTATCTCGAGTCTCCGAGACTAAAGAAACCGGATCGCTATCAGGAGAGTACACGATCTCGCT
CTTCGAAGTCCTAGCTCGTGTCCACGGAGTCAAAACCGTCCCCCACATCGACACCATCATGAAGATCGTAAACAAGACACTGTCTTTAAGTGCAGGATCT
TCCCCTCTTCAGCAAGCTTGCTCGAAGGTGGTACTCGCATTGGCTCGATATTGCATTGATCCGGGAACTTGCGAGAAGGAGAAGAAACAGATAGTCGATT
CAATTTTGAGCCCTCTCGTGGAGAGTCTAGTAAGCAATCAGGAATGTCTTAGCTCCGGAGCTGCTCTTTGCTTGAAGGCTTTGGTCGAATCGGATAACTG
GCGATTCACTTCTCATTCGATGGTGAACAAAGTCTGCCAGAATGTAGCTGTGGCACTCGAGGAGATCGAGAAGTCCATCAAATCGAACTCACACATGTCT
CTAGTTATGTCCCTTTCGAAGCGAGCTCCATCGTTCGTTGAAGCTTACGCGAGGCTGTTTTTAAAAGCTGGAATGGCTATCCTGAATGCCGGTCGTGTTG
TTCAATACCGCGATTCCCAGAAGCGACTGCTGGCGATTCAGATGGTTGATTTCATGATGAAGTGTTTGGATCGAGAGACGATTTCTCCCTCGATGCTCGA
TTCCATCGTTAAGGAGATGGAGAGTTGTCTTTCTGATAAGATGGCGTGGGTGAGAGAGCCTGCATTTGAAGCTTTGCAGACTGCAAAGAGAATCTCTGAA
GAAGCAGCATCCGAATTCGACAAGAGTTCCGGCTCTGTCAGAGGTCGTAGGAGGAATCTATCGAGTCAAGAGTCGCAGACATTCGATTCGTGCATCATGG
AGTATGATTCAATGGTCGAGTCACCTCCATCGAGACTTCCTGCCGACCGCGAAATGTTGAGCTGTGAGAATGGGAGAGTGGATGTATCTCTAAGTGATGG
TTTGTTCTCAGAACTTGCTCATGATCATGGAAGTCCCATTTACAATCCATTGACTGAAAGCATTGCCCGAGATTATGCAGCAGGGGAGTTTACCGGCTTT
ACTTCAAGAAGCAACAGAAATGGAATGCCTAGAAGCCGCACTCCCAGTCCTCAGAAGTCACGCTCCAACGTAAATGGCGATAAATTCGCAACTCCAAAGA
CTCTCATCAGCTCTGCACAGCACACCGGTGGCACCGTGGATTCAGAATTCTGTGAGAATCGAAGCAGGAGGAGCTTGAGAACTCCATGCTCGTGCAACAA
CTACTCAAACTGTCAAACTTCTAAGATTGACGAACATGGGTCCGATGATAATGGCGTTGAGTACAATGCGAATGAGAATGGTGATGTCGCTGAATCAGTT
TCTTCAACAGATGATATTCTTCCTCCTGCTACTGATGCAGAAGAAGTTGTTGCAGAGAAACAACCCAGGAAGAGTAGTTCTCGATGGCTCTTCGTCACCT
TTATTTTTGCCATCTTCTCGGTTTTTGCGTCGTTATTGTTCTTGTTCTTGTTCTTTGATGGCTCTGAACAAGAAGGCCATTATCTTCGTCCTACTTAG
AA sequence
>Lus10002627 pacid=23168826 polypeptide=Lus10002627 locus=Lus10002627.g ID=Lus10002627.BGIv1.0 annot-version=v1.0
MNSRNRSTILNRELSNLDKDLKTRKSAMKTLRSYVETMDSTSIPLFLSRVSETKETGSLSGEYTISLFEVLARVHGVKTVPHIDTIMKIVNKTLSLSAGS
SPLQQACSKVVLALARYCIDPGTCEKEKKQIVDSILSPLVESLVSNQECLSSGAALCLKALVESDNWRFTSHSMVNKVCQNVAVALEEIEKSIKSNSHMS
LVMSLSKRAPSFVEAYARLFLKAGMAILNAGRVVQYRDSQKRLLAIQMVDFMMKCLDRETISPSMLDSIVKEMESCLSDKMAWVREPAFEALQTAKRISE
EAASEFDKSSGSVRGRRRNLSSQESQTFDSCIMEYDSMVESPPSRLPADREMLSCENGRVDVSLSDGLFSELAHDHGSPIYNPLTESIARDYAAGEFTGF
TSRSNRNGMPRSRTPSPQKSRSNVNGDKFATPKTLISSAQHTGGTVDSEFCENRSRRSLRTPCSCNNYSNCQTSKIDEHGSDDNGVEYNANENGDVAESV
SSTDDILPPATDAEEVVAEKQPRKSSSRWLFVTFIFAIFSVFASLLFLFLFFDGSEQEGHYLRPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54385 ARM repeat superfamily protein... Lus10002627
[exp]
0 1
AT5G14210 Leucine-rich repeat protein ki... Lus10032059
[exp]
2.0 0.8783
AT2G33400 unknown protein Lus10011782
[exp]
4.5 0.8704
AT3G15820 ROD1 REDUCED OLEATE DESATURATION 1,... Lus10025747
[exp]
4.5 0.8390
AT5G14210 Leucine-rich repeat protein ki... Lus10032058
[exp]
5.3 0.8600
AT1G12390 Cornichon family protein (.1) Lus10030270
[exp]
6.6 0.8134
AT3G63530 BB2, BB BIG BROTHER, RING/U-box superf... Lus10019703
[exp]
8.9 0.8404
AT5G14210 Leucine-rich repeat protein ki... Lus10035225
[exp]
10.2 0.8299
AT3G19960 ATM1, ATATM myosin 1 (.1.2) Lus10013443
[exp]
11.1 0.8608
AT5G43270 SBP SPL2 squamosa promoter binding prot... Lus10040595
[exp]
11.7 0.8159
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Lus10015900
[exp]
12.2 0.8484

Lus10002627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.