Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35615 111 / 5e-28 Eukaryotic aspartyl protease family protein (.1) AT1G64830 104 / 9e-26 Eukaryotic aspartyl protease family protein (.1) AT1G31450 99 / 1e-23 Eukaryotic aspartyl protease family protein (.1) AT5G33340 98 / 2e-23 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G28010 78 / 2e-16 Eukaryotic aspartyl protease family protein (.1) AT2G28030 73 / 1e-14 Eukaryotic aspartyl protease family protein (.1) AT3G18490 63 / 3e-11 Eukaryotic aspartyl protease family protein (.1) AT1G25510 62 / 1e-10 Eukaryotic aspartyl protease family protein (.1) AT2G28040 61 / 2e-10 Eukaryotic aspartyl protease family protein (.1) AT2G28220 60 / 4e-10 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020263 [exp] 270 / 5e-92 AT2G35615 54 / 2e-08 Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 105 / 8e-26 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 103 / 2e-25 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 103 / 3e-25 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 102 / 6e-25 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 102 / 8e-25 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 102 / 1e-24 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 101 / 2e-24 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 100 / 6e-24 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 117 / 1e-30 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 104 / 1e-25 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 99 / 9e-24 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 57 / 2e-09 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G051800 [exp] 57 / 3e-09 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 56 / 6e-09 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 53 / 8e-08 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 50 / 5e-07 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 50 / 6e-07 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 50 / 8e-07 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002631 pacid=23168827 polypeptide=Lus10002631 locus=Lus10002631.g ID=Lus10002631.BGIv1.0 annot-version=v1.0 ATGTACAACGCCTATGGTCCCGGTGGCGCCGCTAGTAGCAACACTTCGGTACTCGTGTCGGGGAGCGTCGGGCTTGGGCCCGGGCCCACCTCGATAGTGT CGACCGTTTATGAGTACTCGTTGAGCACGAGCTTCGCTTATTGCTTGAGCCCTCCGTTTGTGAATAACGGCACTAGCAAGATTGAGTTTGGAGTTGACTT TGAAGACCAATCTAACGGCACAAAGTCAACGTCCATGTGGTTTTCCGCACCGTACTCGGATTACCGTTTTGTTTTGTCGGCAATTAGCATCGGCGATGAG ATGGTTGTGTTCTCCCAAGACAACAACACAGTACTTAACATGATCATGGACGTGGGGACCCCACTAACCTCCCTCCCAATCAACTTCTACGAACAAGTAG CCCTCAAGGTCGAAAACCAGACCAAACACCTAACCAGAGCAGCAGACCCACTAGCAACCTTGGGTCTATGCTACAACGTGAGCAGCGCCTGCGACCACGC ACTGTCCGACGTCGATGTCCCGATGGTCACATTGCAATTGGGGCTCGACGGCTACCACGTCGCAACGTCATTTGAGCTCAAGCCGGCAAACGTGTTCGTG AAGACGGCGGATGACGTGGCGTGTCTAGCGTTTGTACCTACCCGGTCGACCGACACCGGCGTGTATGGTAACTTGGCTCAGATGGGCTTCTTGGTCACTT ATGACTTGGGACAGTCGATGCTGTCGTTCAAGGAAGTTGATTGCTCTAGTGTTTAG
AA sequence Show only first row Show all	>Lus10002631 pacid=23168827 polypeptide=Lus10002631 locus=Lus10002631.g ID=Lus10002631.BGIv1.0 annot-version=v1.0 MYNAYGPGGAASSNTSVLVSGSVGLGPGPTSIVSTVYEYSLSTSFAYCLSPPFVNNGTSKIEFGVDFEDQSNGTKSTSMWFSAPYSDYRFVLSAISIGDE MVVFSQDNNTVLNMIMDVGTPLTSLPINFYEQVALKVENQTKHLTRAADPLATLGLCYNVSSACDHALSDVDVPMVTLQLGLDGYHVATSFELKPANVFV KTADDVACLAFVPTRSTDTGVYGNLAQMGFLVTYDLGQSMLSFKEVDCSSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35615			Eukaryotic aspartyl protease f...		Lus10002631 [exp]	0	1

Compare expression of checked genes

Lus10002631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.