Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18230 905 / 0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) AT1G07705 55 / 2e-07 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 52 / 3e-06 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020262 [exp] 1522 / 0 AT5G18230 977 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Lus10004921 [exp] 44 / 0.0009 AT5G59710 681 / 0.0 VIRE2 interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059800 [exp] 1084 / 0 AT5G18230 829 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.019G032800 [exp] 1050 / 0 AT5G18230 846 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.017G065900 [exp] 45 / 0.0003 AT1G07705 716 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.001G349400 [exp] 44 / 0.0007 AT1G07705 765 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04065 [flax] [poplar] Not3 Not1 N-terminal domain, CCR4-Not complex component PF04153 [flax] [poplar] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Lus10002632 pacid=23168832 polypeptide=Lus10002632 locus=Lus10002632.g ID=Lus10002632.BGIv1.0 annot-version=v1.0 ATGGGAGCTAGTCGGAAGCTACAGGGGGAGATCGATCGGGTACTGAAGAAGGTCCAGGAAGGTGTAGATGTCTTCGATAGCATCTGGAACAAGGTTTATG ATACGGACAATGCAAATCAGAAGGAGAAGTTTGAGGCGGACTTGAAAAAAGAGATCAAGAAACTGCAGAGATACAGAGACCAGATCAAGACATGGATTCA GTCAAGTGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCACTGGTGGATGCTCGTAAGCTGATTGAACGTGAAATGGAAAGATTTAAGATA TGCGAGAAGGAAACAAAGACAAAAGCATTCTCAAAAGAAGGGCTTGGTCAACAACCGAAAACTGATCCAAGGGAGAAGGCTAAATCGGAGACAAGAGATT GGTTGAACAACTTGGTTAGCGAATTAGAATCCCAGATTGATAGCTTCGAAGCTGAAATGGAAGGTCTTACTGTGAAGAAAGGGAAGACAAGGCCACCTAG ACTGACACACTTAGAGACATCTATACAACGGCACAAGGCTCATATAATGAAGTTAGAGTTGATCTTGAGGCTACTTGATAACGATGAATTGAGTGCTGAG CAGGTCAATGATGTTAAAGATTTCATCGATGACTATGTGGAGCGTAATCAGGACGATTTTGATGAATTTAGTGATGTTGATGAGCTTTATAGCTCGTTGC CATTAGACAAGGTAGAGTCCCTGGAAGATCTTGTAGCAACTGTCCCTCCTGGTCTTGTCAAGGGTGTACCTGTACATAGTCTGAAGTCTCCCTCCGCGGC ATCTGGCGCACCACAATTAAGCAATGCCGTTAGTACTGCGGCCTCTGTCCCAGAGCAACTTGATGATACAGCTTCTCAAGACAGTAATTCTGAGGTTGTT GCTAGAACGCCACCTGCAAAAAGCAGTATCATTGGTTCTTCTGTTCCATCTACACCATCTGCTAGCCATTCAACTCCCGTGAGTGTTCCTGCCCATCCAT TTGCTGCCACGCCAGCAGCTCCTGTAGCTAGCCCAGCTCCAACTGCTGCTAGAGGGCCTGTAGAAAATGCTGCTGCTATTGCTATCCCTTCGTCTCCTGC CCTTCCTACGCATCCTGCAAAGGATGAAGAAACTACAGGAATCCCTGGTTATAGACCATCTTCTTCTCTGGGTGATGCTGGAATAACAAGGGGAATTGGC CGAGGTGGCCTGACTAGCCAGCTGGCAGCTAGTACCCCTCTTACTTCTGGTGCAGTTCCTAGCAATGGATCGCTTGGTGCAGTACCTTTAGTCTCTGACA TGACAAAGCGAAACATTTTGGTAACAGATGATAGAATTGGGAATAGCGGAATGGGCCAGTCTTTGAATTCGCCATTAAGTAATCGGATGATCTTGTCTCA AACTGGCAAGACTAATGATGGTACTGTAGTAGATTCTGGTAATGAAGGTGCTGGGTTAGGTGGCAGAGTCTTCTCTCCTCCTGCGGTTCCTGGTATGCAA TGGAGGCCTGGCAGTTCTTTTCAGAATCCAAATGAACCGGGTCAACTTCGTACTCGAACTGAAATAGCCCCTGATCAGAGGGAGAAATTCTTGCAACGTT TTCAGCAAGTCCAACAAGGCCATGGAATTGGCATGCAATCTCTTCCTGGTGGCAGTCATAAGCAGTTCCCGACACAACAAAACCCGCTTCTGCAACAGGC CTGTTCTAGACACAAATATAACTCTCAAAACTCGTCTCTATCCTCACAAGCTGCCCTAGGTCTAAGTGCTCAAGCACCAGGGTTCAACAATCCTACAGCT ACCACTTTGCAGCAGCCAAGCTTAATTCTTCAACAGTCTAGTCAACCAGGTGCGATACCAAGTTCTGTAACCGACAGCAAGGCTGGTCATTCGAAAATTG ACGAGCAGCAGCAATCGCAGCAATTACCAGATGACTCGGCGTCCGAATCTGTTCCCATGGCCGGACTGGGTATGAGTCTTGCCAGTGAGGATGAGCTGAA AGCTCCTCACACAACAGATGCTGTCTCAAGCTCAATGGCAGAGCCTGTTCAAGTCCCAAGAGACGCAGATTTCTCCCCCGGGCAACCAATACAATCTACG CAGCAATCCAGCGGTTTAGGAGTTATCGGCCGTAGAAGCGTTGCTGACCTTGGTGCCATCGGGGATAATCCCGCTGCAGCAGCTGTAAGTCCTGGTTCGG TGCAGGACAATAGCTACACTTTGCAGATTCTTGAGGCTGCTTATCACAAACTTCCTCAACCCAAAGACTCAGAACGTGCACGGAGCTATATCCCGAGGCA TCCTACCGTCACGCCTTCTAGCTTCCCTCAAGTTCAAGCACCAATTGTAAACAGTCCTGGGTTCTGGGAAAGGTTGACCCAAGATAGCTACGGCACCGAC ACATTGTTCTTCGCATTCTATTACCAACAGAACACTTACCAGCAATATCTAGCTGCAAGGGAGCTGAAGAAGGGATCGTGGAGATATCACAGGAAATACA ACACGTGGTTCCAACGGCACGAGGAGCCCAAACTCGCCACTGATGAGTTCGAGCAAGGGACATACGTCTACTTCGATTTCCACATCGCCAACGACGACCA CCAACACGGATGGTGTCAGCGAATCAAGACGGAGTTCACTTTCGAGTACAACTATCTCGAAGATGAGCTGATCGTCTAG
AA sequence Show only first row Show all	>Lus10002632 pacid=23168832 polypeptide=Lus10002632 locus=Lus10002632.g ID=Lus10002632.BGIv1.0 annot-version=v1.0 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKI CEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNLVSELESQIDSFEAEMEGLTVKKGKTRPPRLTHLETSIQRHKAHIMKLELILRLLDNDELSAE QVNDVKDFIDDYVERNQDDFDEFSDVDELYSSLPLDKVESLEDLVATVPPGLVKGVPVHSLKSPSAASGAPQLSNAVSTAASVPEQLDDTASQDSNSEVV ARTPPAKSSIIGSSVPSTPSASHSTPVSVPAHPFAATPAAPVASPAPTAARGPVENAAAIAIPSSPALPTHPAKDEETTGIPGYRPSSSLGDAGITRGIG RGGLTSQLAASTPLTSGAVPSNGSLGAVPLVSDMTKRNILVTDDRIGNSGMGQSLNSPLSNRMILSQTGKTNDGTVVDSGNEGAGLGGRVFSPPAVPGMQ WRPGSSFQNPNEPGQLRTRTEIAPDQREKFLQRFQQVQQGHGIGMQSLPGGSHKQFPTQQNPLLQQACSRHKYNSQNSSLSSQAALGLSAQAPGFNNPTA TTLQQPSLILQQSSQPGAIPSSVTDSKAGHSKIDEQQQSQQLPDDSASESVPMAGLGMSLASEDELKAPHTTDAVSSSMAEPVQVPRDADFSPGQPIQST QQSSGLGVIGRRSVADLGAIGDNPAAAAVSPGSVQDNSYTLQILEAAYHKLPQPKDSERARSYIPRHPTVTPSSFPQVQAPIVNSPGFWERLTQDSYGTD TLFFAFYYQQNTYQQYLAARELKKGSWRYHRKYNTWFQRHEEPKLATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	0	1
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	1.0	0.9455
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	2.8	0.9060
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	3.5	0.9244
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	3.9	0.9137
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	4.9	0.9218
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	5.2	0.9056
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	5.3	0.9073
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	6.9	0.8976
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	8.2	0.8905
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	10.4	0.9074

Compare expression of checked genes

Lus10002632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.