Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64760 678 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 672 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 620 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 614 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 517 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 504 / 2e-176 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 483 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 477 / 6e-166 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 432 / 4e-148 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 430 / 1e-147 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020261 [exp] 896 / 0 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 769 / 0 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040579 [exp] 497 / 6e-174 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 495 / 3e-173 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 496 / 9e-173 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005788 [exp] 491 / 2e-164 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 471 / 2e-163 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 469 / 1e-162 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 464 / 1e-160 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032900 [exp] 728 / 0 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 726 / 0 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 532 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 513 / 4e-180 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 488 / 2e-170 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 484 / 1e-168 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 478 / 5e-166 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 477 / 2e-165 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 462 / 8e-160 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 458 / 2e-158 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10002633 pacid=23168829 polypeptide=Lus10002633 locus=Lus10002633.g ID=Lus10002633.BGIv1.0 annot-version=v1.0 ATGGGGAGGATTTCAATTTGGGCGATGGTGTTACTATGGAGTTGTTGCTTGTTGTTCTTGAGCTCTGTGGATGGATTGGGAGTGAATTGGGGGACTATGG CGTCACACAAGCTGGATCCGAAAGCGGTGGTTAAGCTTCTGGAAGACAACGGTATTCAGAAGGTGAAGCTGTTTGATGCTGATGCCAACACCATGAATGC TCTTGCTGGGAGCAGTCTGGAAGTTATGGTGGCTATCCCTAATGATCAGCTTCAGTCTATGACTCGTTATGGCAATGCTCAGGAGTGGGTCAAGAGGAAT ATCTCTCGCTATGTCTTCAATGGCGGCGCCAAGATCAAGTATGTAGCAGTGGGGAACGAACCATTCCTCAAGACCTACAACGGAACATTCGAAAGCGTCA CATTTCCGGCACTCCAGAACATCCAGAACGCGCTAAACGAGGCGAATTTTGGCAACATCAAGGCCACCGTCCCCTTAAACGCCGACGTCTACTTCTCCCC TGATGACCAGCCTTACCCTTCAGCCGGAAGGTTCCGACCAGACATCAACGACCTAATGACTGCAATCGTCCAGTTCATGGCACGAAACAAGGCCCCATTC ACGGTCAACATCTACCCGTTCCTAAGCCTCTACGGGAACGACGATTTCCCTTTCAACTACGCATTCTTCGACGGTGTGACTCAGCCGGTAGTGGACCGGG GGTCCGGGGTTCAGTACACGAACGTTTTCGATGCGAATTTCGACACTCTGGTCTCGGCGCTGAAGGCTGCTGGGTTCGGGGACATGCCTATCATAGTTGG GGAAGTGGGGTGGCCTACTGATGGAGATAAGAATGCTAATATCGGCAATGCGTATAGGTTCTATAACGGGCTTATGCCGCGGCTCGCTGCGAATAAAGGG ACTCCTCTTCGACCGGGGTTCATCGAGGTTTACTTGTTCGGCCTTTTAGACGAAGATGCCAAGAGCATTGCTCCCGGGAGCTTCGAGCGGCATTGGGGTA TCTTCCGGTACGATGGACAACCTAAGTTCGCACTTGATCTTTCAGGGCAAGGGCAGAACCGGTTTCTCGTGGGCGCGAAAGGGGTGGACTATCTCCCGGC AAAGTGGTGCGTGTTCAATCCGAACGCCAAAGATCTCAGCAAGCTTGCTGATAACATCAACTACGCATGCACCTTCTCCGACTGCACTGCGCTCGGGTAT GGATCCTCGTGCAACGGGCTTGATGCCAACGGGAACGCCTCGTACGCTTTCAACATGTACTACCAGGTGCAGAACCAGGACGACTTGGCCTGCAATTTCG AAGGCCTAGCCAGCGTTACCACACAGAATATATCGCAGAATAACTGCAATTTCATCATCCAGATCGAGAACGCTTCGGTTCCATCGACGAGAATCCGTCT GGTCTTGTTGGTCGTGTCGTTGATGGTATCATCACTTGCTTTGGTATAG
AA sequence Show only first row Show all	>Lus10002633 pacid=23168829 polypeptide=Lus10002633 locus=Lus10002633.g ID=Lus10002633.BGIv1.0 annot-version=v1.0 MGRISIWAMVLLWSCCLLFLSSVDGLGVNWGTMASHKLDPKAVVKLLEDNGIQKVKLFDADANTMNALAGSSLEVMVAIPNDQLQSMTRYGNAQEWVKRN ISRYVFNGGAKIKYVAVGNEPFLKTYNGTFESVTFPALQNIQNALNEANFGNIKATVPLNADVYFSPDDQPYPSAGRFRPDINDLMTAIVQFMARNKAPF TVNIYPFLSLYGNDDFPFNYAFFDGVTQPVVDRGSGVQYTNVFDANFDTLVSALKAAGFGDMPIIVGEVGWPTDGDKNANIGNAYRFYNGLMPRLAANKG TPLRPGFIEVYLFGLLDEDAKSIAPGSFERHWGIFRYDGQPKFALDLSGQGQNRFLVGAKGVDYLPAKWCVFNPNAKDLSKLADNINYACTFSDCTALGY GSSCNGLDANGNASYAFNMYYQVQNQDDLACNFEGLASVTTQNISQNNCNFIIQIENASVPSTRIRLVLLVVSLMVSSLALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	0	1
AT2G17550			unknown protein		Lus10016693 [exp]	3.9	0.8342
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	4.9	0.8423
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	5.1	0.8498
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	6.5	0.8297
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	7.7	0.8006
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	8.1	0.8332
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	8.9	0.8351
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	9.7	0.8441
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	11.0	0.8284
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	13.9	0.7779

Compare expression of checked genes

Lus10002633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.