Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55520 381 / 1e-136 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) AT3G13445 379 / 8e-136 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) AT3G13440 40 / 0.0004 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020260 [exp] 424 / 3e-153 AT1G55520 380 / 3e-136 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10031531 [exp] 343 / 8e-122 AT3G13445 333 / 4e-118 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) Lus10017716 [exp] 129 / 2e-37 AT1G55520 125 / 1e-36 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10015150 [exp] 104 / 4e-29 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10033675 [exp] 57 / 3e-10 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059300 [exp] 401 / 1e-144 AT1G55520 380 / 9e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Potri.019G033300 [exp] 400 / 3e-144 AT1G55520 376 / 4e-135 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [flax] [poplar] TBP-like PF00352 [flax] [poplar] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Lus10002634 pacid=23168834 polypeptide=Lus10002634 locus=Lus10002634.g ID=Lus10002634.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGTAGGATTGGAAGGGAGTCAGCCTGTTGATATTTCCAAGCATCCTTCTGGGATTGTTCCCACCTTACAGAATATTGTGTCAACGGTGA ACTTGGATTGCAAGTTGGATCTCAAGCAGATCGCTCTCCAAGCTCGCAATGCGGAGTATAACCCTAAACGTTTTGCTGCTGTCATTATGAGGATCAGGGA CCCTAAAACTACTGCGCTCATTTTCGCATCGGGGAAGATGGTGTGCACGGGAGCTAAAAGTGAGCAGCAGTCTAAATTGGCAGCTAGAAAGTATGCTCGA ATCATTCAGAAGCTTGGCTTTCCAGCGAAATTCAAGGACTTCAAGATCCAAAACATAGTCGGCTCGTGTGATGTGAAGTTCCCTATTAGGCTAGAAGGTC TTGCTTACTCCCACGGTGCTTTCTCAAGTTACGAGCCAGAGCTGTTCCCTGGGCTGATTTATCGGATGAAACAGCCGAAGATTGTTCTCCTCATTTTCGT CTCCGGAAAGATTGTGATTACAGGAGCTAAGGTCAGAGATGAGACCTATACAGCCTTCGAGAACATATATCCTGTGCTTACTGAGTTTCGGAAAGTGCAG CAATGGTATGTTGGCCTTACTCTTCCTATCCCTCTCTCCTCTGAACACTCTCTAGCTTATGATCTTTAA
AA sequence Show only first row Show all	>Lus10002634 pacid=23168834 polypeptide=Lus10002634 locus=Lus10002634.g ID=Lus10002634.BGIv1.0 annot-version=v1.0 MAEQVGLEGSQPVDISKHPSGIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR IIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ QWYVGLTLPIPLSSEHSLAYDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	0	1
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	2.0	0.7919
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	2.0	0.8038
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	4.6	0.7830
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	6.2	0.8089
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10013010 [exp]	6.5	0.7961
					Lus10036648 [exp]	6.7	0.7587
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	7.2	0.7614
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	7.7	0.7905
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	9.8	0.7853
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	9.8	0.7649

Compare expression of checked genes

Lus10002634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.