Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04040 149 / 5e-47 unknown protein AT5G18250 147 / 4e-46 unknown protein AT2G41945 52 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020259 [exp] 214 / 2e-72 AT5G18250 174 / 3e-57 unknown protein Lus10021080 [exp] 61 / 1e-11 AT2G41945 230 / 2e-75 unknown protein Lus10029305 [exp] 59 / 2e-11 AT2G41945 202 / 2e-67 unknown protein Lus10017230 [exp] 58 / 2e-10 AT2G41945 215 / 2e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023000 [exp] 164 / 9e-53 AT5G18250 144 / 2e-45 unknown protein Potri.006G195200 [exp] 59 / 1e-11 AT2G41945 200 / 8e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002635 pacid=23168847 polypeptide=Lus10002635 locus=Lus10002635.g ID=Lus10002635.BGIv1.0 annot-version=v1.0 ATGGCGGATTCAAGATCAGAGCTTCTCAGCGACTTGCGCTGCCATCACTGCGCCGGCCCTCTAACCAAGCAAGCGGAAACCAGCAGCTGGACGATTCGAC CTCTGCTCAGAGACAGTTTCTCCATGATTGGGACTGCTGTTGGTGGCACAACTAGCACCTTCTATGGATTTAATCATGTGATGCCGGTAGTTCAGAAGTA CGTAAAAGGACCAATGTGGGTGCATTTCTTCATTGGTGATACATTTCGGACTTGTATAGAACCAAGACTGCCGTTCTTAGCGAATTCCTTTGTCCATATG CAGGCACCTCCAGTGATAGTGTTCGCTTCAGCTTGCGCAGGATTCGCTGGAGGTGCGCTTCCGGCAGTAGCCCAGCTTACCTCATCTGGATACCATGCAG CAGTTTCATCTTCGACCTCTCCTCGAGAAGACAAAGTGCATAGGCCCCAAAGCTCTTCAACCTTGTGA
AA sequence Show only first row Show all	>Lus10002635 pacid=23168847 polypeptide=Lus10002635 locus=Lus10002635.g ID=Lus10002635.BGIv1.0 annot-version=v1.0 MADSRSELLSDLRCHHCAGPLTKQAETSSWTIRPLLRDSFSMIGTAVGGTTSTFYGFNHVMPVVQKYVKGPMWVHFFIGDTFRTCIEPRLPFLANSFVHM QAPPVIVFASACAGFAGGALPAVAQLTSSGYHAAVSSSTSPREDKVHRPQSSSTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04040			unknown protein		Lus10002635 [exp]	0	1
AT1G11320			unknown protein		Lus10013574 [exp]	13.7	0.8847
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	24.4	0.8813
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	29.2	0.8750
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	29.3	0.8779
AT3G29170			Eukaryotic protein of unknown ...		Lus10028939 [exp]	31.1	0.8580
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	32.1	0.8670
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	43.2	0.8674
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	43.4	0.8601
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	45.5	0.8683
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	49.4	0.8528

Compare expression of checked genes

Lus10002635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.