Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19800 461 / 1e-163 ABCI14, TGD1 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020258 [exp] 609 / 0 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234400 [exp] 484 / 7e-173 AT1G19800 506 / 0.0 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02405 [flax] [poplar] MlaE Permease MlaE
Representative CDS sequence Show only first row Show all	>Lus10002636 pacid=23168828 polypeptide=Lus10002636 locus=Lus10002636.g ID=Lus10002636.BGIv1.0 annot-version=v1.0 ATGCAGACAGCTTGTCATCTCCGTCCAATTTTCTACTTCTCCAGTCGAAGGAGCGTTGTGAATCCAATTGGGTATACGAAAGTTACGAACTTGAATCAAA ATCGACTCTTCTTAACTCAGCTTTACAAGCAACAACCCGGTCTTCGAGCTAGAGCGATTGATGGCCGTCCACCGATCTCGATGCTCGAAGAATCAGAAGA AGAAGAAGAAGAATCAGAACAAGATGATGAAAGCTCGACGAATCACGCAATGGACGAGCCACAGTTCTCGAAATGGTCACCTCCAGAGTACATATGGAGG GGCCTATCAGTGTTTGTATTAGCAGGTCAAGTGATCCAACGCACTCTAACTGGCAAAATACACTGGAGGAACACATTACAGCAGCTCGAAAGAGTCGGGC CGAAATCTGTCGGAGTCTGTCTCTTAACAGCAGCATTCGTCGGGATGGCGTTCACCATCCAGTTCGTCCGCGAGTTCACAAGACTCGGCTTGAATAGAGC CGTTGGTGGAGTCCTCGCCCTCGCCTTCTCGCGCGAGCTAAGCCCTGTTGTAACCTCAATCGTGGTTGCTGGCCGAATGGGGAGCGCCTTCGCAGCCGAA TTGGGAACAATGCAGGTCTCCGAGCAGACCGACACACTGAGGGTCCTTGGAGCAAACCCTGTCGACTATCTCGTTACTCCTCGAGTTATTGCTCTCTGCA TCGCTCTGCCGTTCTTGACCCTGATGTGTTTCACGGTAGGCATGGCGTCGAGTGCCTTGCTGGCAGATAGTGTTTACGGCGTTAGCATCAACATCATAAT GGATTCAGCTCACCGAGCGCTTAGGTCGTGGGATTTAGTTAGCGCGATGATCAAGTCGGTGTGCTTTGGTGGGATCATATCGACGGTGAGCTGTGCATGG GGTATTACAACGATAGGTGGCGCGAAGGGCGTTGGCGAGTCCACGACTTCTGCGGTGGTTATCTCCCTCGTCGGAATATTTGTTGCCGATTTCCTGCTCT CGTCTTTGTTCTTCCAAGGTGCTGGGGACTCTCTAAAGAAGCTATAG
AA sequence Show only first row Show all	>Lus10002636 pacid=23168828 polypeptide=Lus10002636 locus=Lus10002636.g ID=Lus10002636.BGIv1.0 annot-version=v1.0 MQTACHLRPIFYFSSRRSVVNPIGYTKVTNLNQNRLFLTQLYKQQPGLRARAIDGRPPISMLEESEEEEEESEQDDESSTNHAMDEPQFSKWSPPEYIWR GLSVFVLAGQVIQRTLTGKIHWRNTLQQLERVGPKSVGVCLLTAAFVGMAFTIQFVREFTRLGLNRAVGGVLALAFSRELSPVVTSIVVAGRMGSAFAAE LGTMQVSEQTDTLRVLGANPVDYLVTPRVIALCIALPFLTLMCFTVGMASSALLADSVYGVSINIIMDSAHRALRSWDLVSAMIKSVCFGGIISTVSCAW GITTIGGAKGVGESTTSAVVISLVGIFVADFLLSSLFFQGAGDSLKKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	0	1
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	1.0	0.8866
AT1G02290			unknown protein		Lus10018907 [exp]	2.8	0.8481
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	3.9	0.8494
AT4G04614			unknown protein		Lus10006902 [exp]	4.5	0.8412
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	7.6	0.8526
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	10.6	0.7970
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	11.4	0.8212
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	12.1	0.8322
AT1G26580			unknown protein		Lus10026655 [exp]	12.4	0.8279
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	13.4	0.7892

Compare expression of checked genes

Lus10002636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.