Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56340 228 / 6e-71 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 216 / 1e-66 RING/U-box superfamily protein (.1) AT4G26400 183 / 4e-54 RING/U-box superfamily protein (.1.2) AT3G13430 161 / 4e-46 RING/U-box superfamily protein (.1.2.3) AT3G19950 149 / 2e-41 RING/U-box superfamily protein (.1) AT1G26800 105 / 1e-26 RING/U-box superfamily protein (.1) AT2G40830 104 / 6e-25 RHC1A RING-H2 finger C1A (.1.2.3) AT3G46620 102 / 1e-23 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 101 / 2e-23 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 100 / 2e-23 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020258 [exp] 558 / 0 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 189 / 1e-55 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 145 / 1e-40 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10040783 [exp] 106 / 4e-26 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013235 [exp] 103 / 1e-24 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10028063 [exp] 103 / 3e-24 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10030755 [exp] 102 / 4e-24 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10012819 [exp] 100 / 4e-24 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10025612 [exp] 100 / 2e-23 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060500 [exp] 247 / 9e-79 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 243 / 6e-77 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 226 / 2e-70 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 220 / 1e-67 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 143 / 5e-39 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 141 / 6e-39 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 141 / 7e-39 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 142 / 9e-39 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 113 / 3e-29 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 106 / 2e-26 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002637 pacid=23168844 polypeptide=Lus10002637 locus=Lus10002637.g ID=Lus10002637.BGIv1.0 annot-version=v1.0 ATGGCGGATACAGTGGTGGACCAATACTGGTGTCATATGTGCGGCCGCACAGTGAGCCCAGTAATGGAACCCGAAATCAAATGCCCCATCTGTGAGAGTG GGTTTGTGGAAGAAGTCTCTCCCAACAGCAACCTCACCGCCACCATAACCAACTTCAACGGCGAAAACAACAACAACAACGAAAATACTAATACCGATAG CGGTATTAATGGTACTAATGAAAATGGATTCGATGCAGAATCAGAATCAGAATCAGAACGTGCATTCTCTCTTTGGGCGCCGATCTTTCTAGGGCTAATG GATGGCTTGGGTGCCTATCGCCCAACTCTGGCTCTCCCTAGCAATGCCATCACCACCGACGAAGCTCAACAAAATGAACAACATCAACAACAACTAGATA GGGAGTTTGAGTCACTCCTTAGGAGGAGAAGGACTCGAAGCTCGGTCTCGATCCTTCGCTTGCTCCACGACATTCGTGTCAGGGCCGAAACCAACCACCA TGGCCAAGAAACTGATGATCATGGTAGTCAAAATCGAGATTCCAGGAATAGCAGGTTGATTCTGGTTGATCCATTCAACGAAGGTGCACTGATACTCCAC GGACCAACTGAGCAAGCTCGACCCGAGAGCATTCCTGCTCGATCATTCGCGGACTACCTTATAGGTCCCGGGCTAGACTTGTTGCTCCAGCATTTGGCTG AGAACGATCCCAACAGATATGGAACTCCACCGGCTCAAAAGGAAGTAGTCGACGCAATGCCAACAATTACAGTCGAAGACAACCTCCAATGCGCTGTCTG CCTCGAGGATTTTGAGCTCGGGAGTGAGGCCAAGGAGATGCCTTGTAAGCACAAGTTCCATGAAGGGTGCATCCATCCTTGGCTCGAGCTCCACAGCTCT TGCCCGGTTTGTAGGTTCCAGATGCCTACATCGGATCAAGCTGATGAATCCAAGACCGAGTTGAATGTTAGCGGTGGAAGCGACGGTGATAGTAATAACA ACAACCCGAGATCGGGCGAAAGATCAAGGCAGCATCTGTTTCCATTTCCATTCAACGGTTCGCTTTCGCTCCTGAGGCCACCGAGCAGCATCGGTACCAC TTCATCAGCATCGGGATCGACATCCAATTCTTCGCCCGTTGTGCATCTGTTGGGAGATTCCTCTGCTCGTAGTAGTGACGAACCTGGAGGAGGAGGAGGA GGAGGAGGACATCATGAGTTGCCTTGA
AA sequence Show only first row Show all	>Lus10002637 pacid=23168844 polypeptide=Lus10002637 locus=Lus10002637.g ID=Lus10002637.BGIv1.0 annot-version=v1.0 MADTVVDQYWCHMCGRTVSPVMEPEIKCPICESGFVEEVSPNSNLTATITNFNGENNNNNENTNTDSGINGTNENGFDAESESESERAFSLWAPIFLGLM DGLGAYRPTLALPSNAITTDEAQQNEQHQQQLDREFESLLRRRRTRSSVSILRLLHDIRVRAETNHHGQETDDHGSQNRDSRNSRLILVDPFNEGALILH GPTEQARPESIPARSFADYLIGPGLDLLLQHLAENDPNRYGTPPAQKEVVDAMPTITVEDNLQCAVCLEDFELGSEAKEMPCKHKFHEGCIHPWLELHSS CPVCRFQMPTSDQADESKTELNVSGGSDGDSNNNNPRSGERSRQHLFPFPFNGSLSLLRPPSSIGTTSSASGSTSNSSPVVHLLGDSSARSSDEPGGGGG GGGHHELP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55530			RING/U-box superfamily protein...		Lus10002637 [exp]	0	1

Compare expression of checked genes

Lus10002637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.