Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37640 316 / 1e-107 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G03090 312 / 3e-106 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G39700 311 / 1e-105 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G02260 310 / 1e-105 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G56320 309 / 6e-105 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G55500 305 / 3e-103 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT1G69530 302 / 2e-102 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G40610 299 / 5e-101 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 296 / 5e-100 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G28950 288 / 6e-97 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020257 [exp] 495 / 3e-178 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1) Lus10023407 [exp] 316 / 1e-107 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040801 [exp] 316 / 1e-107 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 316 / 2e-107 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040286 [exp] 314 / 7e-107 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10036763 [exp] 310 / 2e-105 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 309 / 5e-105 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 308 / 1e-104 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 304 / 6e-103 AT2G40610 397 / 2e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031800 [exp] 316 / 1e-107 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G001100 [exp] 312 / 2e-106 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G202500 [exp] 310 / 3e-105 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.001G240900 [exp] 310 / 3e-105 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.008G057100 [exp] 309 / 4e-105 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.008G088300 [exp] 308 / 1e-104 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.006G086100 [exp] 308 / 1e-104 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.010G167200 [exp] 308 / 2e-104 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.019G057500 [exp] 303 / 6e-103 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 300 / 2e-101 AT2G40610 400 / 6e-143 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10002638 pacid=23168835 polypeptide=Lus10002638 locus=Lus10002638.g ID=Lus10002638.BGIv1.0 annot-version=v1.0 ATGAATCTTTGGGTCAGAATCGCACTCGCAACGTTCGTATCCTTGTCTTATTCGAACCTCATCTACGGCCATGAAAAGAAACCGTCCCATGGCAGCCATC TTGATAAGAAGAAACAGCATGCCATAGCTGGGAAATGGACTCACGCTCATGCAACTTTCTACGGAGGTGGCGACGCCTCCGGCACAATGGGCGGAGCGTG TGGCTACGGTAACCTCTACAGCGAAGGCTACGGCGTAAAGACCGCAGCTTTGAGCACCGCCCTCTTCAACAACGGCAAGTCCTGCGGAGCCTGCTACGAG ATAATTTGTATCGACGATTTGCAGTGGTGTAAAGCCGCGAATGCGATCACAGTCACCGCCACCAACTTCTGCCCCGCAAACTACGCCGAGCCAAACAACA ACGGCGGATGGTGCAACCCACCGCTGGAGCACTTCGACCTGTCTGTGCCAATATTCCTCCATATCGCGCAGTACAAGGCCGGCATCGTACCAGTAAAGTA CCGGCGTGTGACATGCAAGCGGATAGGAGGGATTAGGTTTACGATCACCGGGAGCACGTATTTCAACCTCGTGCTGGTGAGCAATGTTGGGGGAGCGGGG GATGTCGTGGCGATGTCGGTGAAGGGATCCAAGACGAGGTGGATGCGGATGGCGAGGAACTGGGGACAGAATTGGCAGGCGAATGATGTACTTGTAGGGC AGGAGTTGTCGTTTAAGGCTACTACAAGTGATGGCCGGTCGACGGTTTCACATAAGGCGGTTCCAGCGGGATGGCAATTTGGACAGACGTTTACTGGCTC TGCTGGTTCTGTAGTACGAGAATGCAGCCCTGTAAAACGAAGCTATTCAAGCAACGAAACATACAGAAAACAAACAGGTGAGACTCGCCATCAACATCAT GGAACAACCAACGATGGAGAAACTTGTGCAGGCAGTCGTCACCGCGGGGGTTTTGAGGAAACTCTAAGCATCGCCTTCGAAATCGGACTCATTGGGCAAC GTCGTTTCCAGAGCCGCCGTCAGACCATCGGAGATGGCAGGGTGGCTAGAGAAATGGCGACGTGGGTGAGAAACCGATTGAAGGGACGATGA
AA sequence Show only first row Show all	>Lus10002638 pacid=23168835 polypeptide=Lus10002638 locus=Lus10002638.g ID=Lus10002638.BGIv1.0 annot-version=v1.0 MNLWVRIALATFVSLSYSNLIYGHEKKPSHGSHLDKKKQHAIAGKWTHAHATFYGGGDASGTMGGACGYGNLYSEGYGVKTAALSTALFNNGKSCGACYE IICIDDLQWCKAANAITVTATNFCPANYAEPNNNGGWCNPPLEHFDLSVPIFLHIAQYKAGIVPVKYRRVTCKRIGGIRFTITGSTYFNLVLVSNVGGAG DVVAMSVKGSKTRWMRMARNWGQNWQANDVLVGQELSFKATTSDGRSTVSHKAVPAGWQFGQTFTGSAGSVVRECSPVKRSYSSNETYRKQTGETRHQHH GTTNDGETCAGSRHRGGFEETLSIAFEIGLIGQRRFQSRRQTIGDGRVAREMATWVRNRLKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	0	1
					Lus10031873 [exp]	1.4	0.9524
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	2.4	0.9449
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	4.0	0.9083
AT5G62140			unknown protein		Lus10038887 [exp]	4.8	0.8911
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	5.3	0.8791
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	5.5	0.9014
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	6.9	0.9252
AT1G11880			transferases, transferring hex...		Lus10000535 [exp]	7.1	0.8553
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	7.4	0.8529
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	8.1	0.9113

Compare expression of checked genes

Lus10002638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.