Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40080 142 / 6e-42 ENTH/ANTH/VHS superfamily protein (.1) AT5G65370 57 / 4e-10 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 56 / 7e-10 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT2G01600 53 / 8e-09 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 50 / 8e-08 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G14910 50 / 1e-07 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 39 / 0.0005 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002643 [exp] 244 / 4e-84 AT4G40080 203 / 8e-65 ENTH/ANTH/VHS superfamily protein (.1) Lus10002642 [exp] 226 / 1e-76 AT4G40080 199 / 2e-63 ENTH/ANTH/VHS superfamily protein (.1) Lus10023837 [exp] 83 / 1e-19 AT4G40080 192 / 1e-58 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 60 / 4e-11 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 60 / 4e-11 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 55 / 2e-09 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 55 / 3e-09 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 54 / 4e-09 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 52 / 2e-08 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160800 [exp] 86 / 2e-20 AT4G40080 209 / 2e-64 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 59 / 7e-11 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.008G132100 [exp] 57 / 5e-10 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G026900 [exp] 55 / 2e-09 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.010G110000 [exp] 53 / 9e-09 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 52 / 2e-08 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G066900 [exp] 52 / 3e-08 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.014G158600 [exp] 43 / 4e-05 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 42 / 6e-05 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 41 / 0.0001 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10002641 pacid=23168800 polypeptide=Lus10002641 locus=Lus10002641.g ID=Lus10002641.BGIv1.0 annot-version=v1.0 ATGGGTCGAATAAGCAGTCTACAAGATCTGATCGGCGCGATCAAGGACAAAGCATCACAAACCAAAGCCGCCATCAAAACCCCCACCTCCAAATCCCACC ACCACTCCTTACTCCGAGCCACAACCCACGACCTCTTCAACCCGCCAAACCCAAAACACTTATCCAATCTCCTCTCCTCCGCCGGCGAAGGCTCACGCGC CACCGCCGCTGCCGCAATCGACTCCCTCATGTACCGCCTCCAAACCACCCACGACTCCTCCGTCGCGCTCAAGTGCTTAATCGTCGTTCACTCCATCGTC AAACATGGCAGCTTCATCCTCCAAGACCAGCTCTCCGTCTACCCTTCCTCCTCCGGCGGCCGGAACTACCTTAAACTGTCGAATTTCCGGGACGGCTGGA ATCCGGTGTACAGTTGTTCCTTGGTTCGTCCAAATTACTCGAACTTATAA
AA sequence Show only first row Show all	>Lus10002641 pacid=23168800 polypeptide=Lus10002641 locus=Lus10002641.g ID=Lus10002641.BGIv1.0 annot-version=v1.0 MGRISSLQDLIGAIKDKASQTKAAIKTPTSKSHHHSLLRATTHDLFNPPNPKHLSNLLSSAGEGSRATAAAAIDSLMYRLQTTHDSSVALKCLIVVHSIV KHGSFILQDQLSVYPSSSGGRNYLKLSNFRDGWNPVYSCSLVRPNYSNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002641 [exp]	0	1
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002643 [exp]	1.0	0.7578
AT1G28540			unknown protein		Lus10042196 [exp]	8.2	0.7351
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	19.1	0.7153
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	27.3	0.6656
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	29.2	0.7035
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	39.3	0.6793
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	39.8	0.6768
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	41.0	0.6832
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	62.2	0.6756
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	86.9	0.5933

Compare expression of checked genes

Lus10002641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.