Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40080 174 / 3e-53 ENTH/ANTH/VHS superfamily protein (.1) AT5G10410 77 / 6e-17 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 74 / 1e-15 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT5G57200 72 / 8e-15 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 72 / 9e-15 ENTH/ANTH/VHS superfamily protein (.1) AT5G65370 69 / 4e-14 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 69 / 9e-14 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G14910 68 / 2e-13 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 66 / 1e-12 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 63 / 1e-11 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002643 [exp] 281 / 8e-98 AT4G40080 203 / 8e-65 ENTH/ANTH/VHS superfamily protein (.1) Lus10002641 [exp] 220 / 2e-74 AT4G40080 164 / 4e-50 ENTH/ANTH/VHS superfamily protein (.1) Lus10023837 [exp] 111 / 1e-29 AT4G40080 192 / 1e-58 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 75 / 1e-15 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 75 / 1e-15 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 69 / 6e-14 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 69 / 7e-14 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10021796 [exp] 69 / 9e-14 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 69 / 1e-13 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160800 [exp] 112 / 6e-30 AT4G40080 209 / 2e-64 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 77 / 1e-16 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 72 / 4e-15 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G142800 [exp] 72 / 9e-15 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G066900 [exp] 72 / 9e-15 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.008G132100 [exp] 70 / 3e-14 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 69 / 6e-14 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.010G110000 [exp] 67 / 4e-13 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 67 / 5e-13 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 57 / 4e-10 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10002642 pacid=23168801 polypeptide=Lus10002642 locus=Lus10002642.g ID=Lus10002642.BGIv1.0 annot-version=v1.0 ATGGGTCGAATAACCAGTCTAAAAGATCTAATCGGCGCGATCAAGGACAAAGCATCACAAACAAAAGCCGCCATCAAAACCCCCACCTCCCAATCCCACC ACTACTCTCTACTCCGAGCCACAACCCACGACCTCTTCAACCCGCCAAACCCAAAACACTTATCCAATCTCCTCTCCTCCGCCGGCGACGGCTCACGCGC CACCGCCGCCGCTGCAATCGACTCCCTTATGTACCGCCTCCAAACCCCCAAAGACTCCTCTGTCGCGCTCAAGTGCTTAATCGTTGTCCACTCCATCGTC AAGCGTGGCAGCTTCATCCTCCAGGACCAGCTCTCTGTCTACCCAACCTCCTCCGGCGGCCGGAACTACCTCAAACTGTCGAATTTCCGGGACGGCTCGA ATCCGGTGTCGTGGGAACACTCCTGCTGGGTCAGATGGTACTCTAGGTACCTCGAATTGCTGATTTACGCTTCAAAAGTTATCGGTTTCTTCCTCGTTCA GAATCCGAATCGCTCGAATTCGAGCGATTCGGATTCTGAACGAGGAAGAAACCGATAA
AA sequence Show only first row Show all	>Lus10002642 pacid=23168801 polypeptide=Lus10002642 locus=Lus10002642.g ID=Lus10002642.BGIv1.0 annot-version=v1.0 MGRITSLKDLIGAIKDKASQTKAAIKTPTSQSHHYSLLRATTHDLFNPPNPKHLSNLLSSAGDGSRATAAAAIDSLMYRLQTPKDSSVALKCLIVVHSIV KRGSFILQDQLSVYPTSSGGRNYLKLSNFRDGSNPVSWEHSCWVRWYSRYLELLIYASKVIGFFLVQNPNRSNSSDSDSERGRNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	0	1
AT4G21215			unknown protein		Lus10007639 [exp]	4.4	0.7886
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10012526 [exp]	6.7	0.7658
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	28.9	0.7504
AT2G04865			Aminotransferase-like, plant m...		Lus10012346 [exp]	37.8	0.6738
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	38.1	0.6906
AT4G33590			unknown protein		Lus10036463 [exp]	44.9	0.7300
					Lus10004065 [exp]	55.7	0.7136
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	57.3	0.6360
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	75.8	0.6556
AT1G13810			Restriction endonuclease, type...		Lus10010434 [exp]	85.6	0.6733

Compare expression of checked genes

Lus10002642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.