Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40080 181 / 3e-56 ENTH/ANTH/VHS superfamily protein (.1) AT5G10410 80 / 7e-18 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 77 / 1e-16 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT5G65370 75 / 3e-16 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 75 / 5e-16 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 72 / 5e-15 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 71 / 1e-14 ENTH/ANTH/VHS superfamily protein (.1.2) AT4G25940 69 / 7e-14 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 69 / 9e-14 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 64 / 5e-12 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002642 [exp] 290 / 3e-101 AT4G40080 199 / 2e-63 ENTH/ANTH/VHS superfamily protein (.1) Lus10002641 [exp] 244 / 7e-84 AT4G40080 164 / 4e-50 ENTH/ANTH/VHS superfamily protein (.1) Lus10023837 [exp] 114 / 1e-30 AT4G40080 192 / 1e-58 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 79 / 2e-17 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 79 / 3e-17 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 76 / 4e-16 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10021796 [exp] 74 / 2e-15 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 74 / 2e-15 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 71 / 2e-14 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160800 [exp] 112 / 4e-30 AT4G40080 209 / 2e-64 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 78 / 5e-17 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.008G132100 [exp] 75 / 5e-16 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G066900 [exp] 73 / 2e-15 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G026900 [exp] 73 / 3e-15 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G142800 [exp] 73 / 4e-15 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 72 / 4e-15 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 71 / 2e-14 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G075800 [exp] 69 / 5e-14 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 62 / 4e-12 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10002643 pacid=23168791 polypeptide=Lus10002643 locus=Lus10002643.g ID=Lus10002643.BGIv1.0 annot-version=v1.0 ATGGGTCGAATAACCAGTCTAAAAGATCTGATCGGCGCGATCAAGGACAAAGCATCACAAACCAAAGCCGCCATCAAAACCCCCACCTCCAAATCCCACC ACCACTCCTTACTCCGAGCCACAACCCACGACCTCTTCAACCCGCCAAACCCAAAACACTTATCCAATCTCCTCTCCTCCGCCGGCGAAGGCTCACGCGC CACCGCCGCTGCCGCAATCGACTCCCTCATGTACCGCCTCCAAACCACCCACGACTCCTCCGTCGCGCTCAAGTGCTTAATCGTCGTTCACTCCATCGTC AAACATGGCAGCTTCATCCTCCAAGACCAGCTCTCCGTCTACCCTTCCTCCTCCGGCGGCCGGAACTACCTTAAACTGTCGAATTTCCGGGACGGCTGGA ATCCGGTGTCGTGGGAGCATTCCTGCTGGGTCAGATGGTATGCTAGGTACCTCGAATTGCTGATTTACACTTCGAAAGTTATCGGTTCCTTCCTCGGTCC TAACCCGAATCGCTCTTCGAGCGATTCGGTATCGGCGATGTCGGGTTGA
AA sequence Show only first row Show all	>Lus10002643 pacid=23168791 polypeptide=Lus10002643 locus=Lus10002643.g ID=Lus10002643.BGIv1.0 annot-version=v1.0 MGRITSLKDLIGAIKDKASQTKAAIKTPTSKSHHHSLLRATTHDLFNPPNPKHLSNLLSSAGEGSRATAAAAIDSLMYRLQTTHDSSVALKCLIVVHSIV KHGSFILQDQLSVYPSSSGGRNYLKLSNFRDGWNPVSWEHSCWVRWYARYLELLIYTSKVIGSFLGPNPNRSSSDSVSAMSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002643 [exp]	0	1
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002641 [exp]	1.0	0.7578
AT5G67390			unknown protein		Lus10011080 [exp]	14.3	0.7384
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	75.0	0.6809
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	113.3	0.6177
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	129.7	0.6628

Compare expression of checked genes

Lus10002643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.