Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 657 / 0 MATE efflux family protein (.1) AT5G44050 612 / 0 MATE efflux family protein (.1) AT5G10420 609 / 0 MATE efflux family protein (.1) AT1G33100 445 / 3e-153 MATE efflux family protein (.1) AT1G33110 444 / 7e-153 MATE efflux family protein (.1.2) AT1G33080 440 / 5e-151 MATE efflux family protein (.1.2) AT1G33090 436 / 2e-149 MATE efflux family protein (.1) AT1G47530 429 / 3e-147 MATE efflux family protein (.1) AT3G26590 411 / 8e-140 MATE efflux family protein (.1) AT1G61890 409 / 1e-138 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012741 [exp] 899 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 666 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 620 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 615 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 513 / 6e-180 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 456 / 2e-157 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 429 / 6e-147 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 421 / 3e-143 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 418 / 5e-142 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010200 [exp] 751 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 622 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 568 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.013G069700 [exp] 463 / 2e-160 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 443 / 4e-154 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.019G063500 [exp] 424 / 1e-144 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 422 / 7e-144 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 416 / 1e-141 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 414 / 6e-141 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 412 / 6e-140 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002645 pacid=23168799 polypeptide=Lus10002645 locus=Lus10002645.g ID=Lus10002645.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAAAGGTTCCCCTGTTGCTAAAAAGCGGCCGTACTTCCGATGACGACGAAAACAAAGGACAAGATTTGGCGAAGAAGGTCTGGACCGAGA CGCAGAAGCTATGGAACATAGTGGGTCCGGCCATATTCAGCAGAGTCGCTTCCTATTCCATGCTTGTCATCACCCAAGCCTTCGCCGGCCATCTCGGCGA CCTCGAACTCGCCGGCATCTCCATCGCCAATAATGTCATCGTCGGCTTCGACTTCGGCCTCTTGTTAGGGATGGCGAGCGCTCTCGAAACGCTCTGCGGG CAGGCGTACGGAGCCAAGAAGTACTACATGCTGGGCGTATACATGCAGAGATCATGGATCGTCCTGTTCCTCTGCTGCATCCTCCTCCTACCGCTCTACC TCTTCGCTTCACCGTTCCTGAAACTGCTCGGACAGCCAGATGATGTGTCTGAGGTTTCAGGAATCGCGGCCTTGTGCATGATTCCGCTCCATTTCAGCTT CGCCTTCCAGTTCCCGCTCCAGAGGTTCCTGCAGAGCCAGCTTAAGAACGCGGTGATCGCCTGGATGTCCCTGGTGGCTCTAGTGGTCCATATCGCCGTT AGCTGGCTGTTCGTTTACAAGTTGCAGCTTGGCGTGATTGGGACCGCCATGACTCTGAACTTTTCGTGGTGGGTTCTCGCGTTCGGTTGCCTTGCCTACA CTGTCTGTGGCGGATGTCCTCTCACTTGGACTGGATTCTCCATGGAAGCCTTTGCAGGTCTCTGGGACTTCGCCAAGCTCTCTGCTTCTTCTGGCGTCAT GCTCTGTCTGGAGAATTGGTACTACAGAATACTAATCTTGATGACTGGGAATCTGAAGAATGCAGAGATCGCTGTGGATGCTTTGTCCATTTGCATGACC ATCAATGGTTGGGAAATGATGATTCCGTTTGCCTTCTTCGCCGGAATTGGAGTGAGGGTAGCAAACGAGCTAGGAGCCGGAAACGGGAAAGGAGCCCGGT TCGCTACCATAGTTGCGGTGTCGCAATCAGTGATGATCGGACTCTTCTTCTGGTTGCTCCTCACGCTTTACAACGATCAAATCGGGTGGATCTTCACCAA CAGTGAACCGGTTCTCACCGCGGTCAACCAGCTCTCAACCTTACTTGCTTTCACAATTTTACTCAACAGCGTTCAGCCCGTTCTCTCCGGAGTGGCCGTG GGCTCTGGATGGCAAAAGTACGTTGCCTACATCAACTTGGGCTGCTACTATCTCATTGGAGTCCCCCTTGGGTTTATCATGGGCTGGGCTTTCGACCTCG GTGTAAAGGGGATTTGGGCTGGAATGATATTTGGTGGAACAGCAATCCAGACATTGATATTAGCCATCATAACCATTCGATGTGACTGGGAGAAAGAGGC TGACAAGGCCAAATTGCATGTAACCAAATGGTCGGAAGTTCACGGATCAAATTCTTAA
AA sequence Show only first row Show all	>Lus10002645 pacid=23168799 polypeptide=Lus10002645 locus=Lus10002645.g ID=Lus10002645.BGIv1.0 annot-version=v1.0 MAESKVPLLLKSGRTSDDDENKGQDLAKKVWTETQKLWNIVGPAIFSRVASYSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCG QAYGAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPFLKLLGQPDDVSEVSGIAALCMIPLHFSFAFQFPLQRFLQSQLKNAVIAWMSLVALVVHIAV SWLFVYKLQLGVIGTAMTLNFSWWVLAFGCLAYTVCGGCPLTWTGFSMEAFAGLWDFAKLSASSGVMLCLENWYYRILILMTGNLKNAEIAVDALSICMT INGWEMMIPFAFFAGIGVRVANELGAGNGKGARFATIVAVSQSVMIGLFFWLLLTLYNDQIGWIFTNSEPVLTAVNQLSTLLAFTILLNSVQPVLSGVAV GSGWQKYVAYINLGCYYLIGVPLGFIMGWAFDLGVKGIWAGMIFGGTAIQTLILAIITIRCDWEKEADKAKLHVTKWSEVHGSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	0	1
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	2.0	0.9751
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	2.4	0.9618
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	3.2	0.9727
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	4.0	0.9632
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	4.7	0.9505
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	5.5	0.9676
AT5G23160			unknown protein		Lus10017395 [exp]	7.5	0.9605
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	8.5	0.9487
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	8.8	0.9253
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	9.2	0.9619

Compare expression of checked genes

Lus10002645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.