Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38100 105 / 3e-28 unknown protein AT4G01150 84 / 2e-20 unknown protein AT2G46820 53 / 1e-08 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) AT1G52220 49 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012739 [exp] 295 / 1e-102 AT4G38100 135 / 3e-40 unknown protein Lus10012645 [exp] 82 / 2e-19 AT4G01150 212 / 3e-71 unknown protein Lus10010132 [exp] 82 / 2e-19 AT4G01150 215 / 2e-72 unknown protein Lus10003031 [exp] 66 / 1e-13 AT4G01150 153 / 3e-48 unknown protein Lus10030191 [exp] 50 / 9e-08 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Lus10002673 [exp] 48 / 7e-07 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147801 [exp] 114 / 4e-32 AT4G38100 107 / 1e-29 unknown protein Potri.014G093900 [exp] 83 / 7e-20 AT4G01150 181 / 3e-59 unknown protein Potri.002G166800 [exp] 81 / 4e-19 AT4G01150 188 / 6e-62 unknown protein Potri.001G184700 [exp] 55 / 2e-09 AT1G52220 160 / 3e-51 unknown protein Potri.014G106400 [exp] 52 / 2e-08 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.002G180400 [exp] 47 / 1e-06 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002647 pacid=23168790 polypeptide=Lus10002647 locus=Lus10002647.g ID=Lus10002647.BGIv1.0 annot-version=v1.0 ATGGAGATCTGCACTTCTAAACCCTCTGCTGCCGCCATCTCTACTCTCCCTAAGCTCCCCACAGTTATCACCTCTGCTCGCCCGCTCTCCCGCCTCCATT TCTCTCGCTCCCTCCGCGCTACCACATCGTTGCGGTGTACTCAAAGGTCGAATACTTCGGAGGAGACTCAAGTCGGGGGAGGGAGCCCTTACGTTGTCGA GGAATCCAACGGTTTCGGTGGAAGTAGTAGCGCGACGGAGGAAACCGATGGGAAAACTCCCGCTGTTGAAGCTGTTGTTGATTACGAGGAAAACGTTGCC GAAGAACAGTCAAGTGAAGGAGCTGCTGCTGCTTTCCCCGAGACTGTAAATGACTTTCTGTCTGATTTCAATCTCAAGTTCGACTCGGAGGACACAGTAT CCCTTGTGATCTACGGCAGTGGGGCTCTTCTCGCCCTTTGGTTGCTCTCAGCTGTTGTCAACGCAGTCGATTCAATTCCATTGTTTCCGAAGCTGATGGA AGTTGTTGGACTTGGCTACTCATTCTGGTTCACCTCCCGATACTTGCTGTTTAAGAAAAACAGGGGAGAGCTGGCTGAGAAAGTTGAAGAGCTGAAGCAA CAGGTTCTTGGAACAAAAGATGACTGA
AA sequence Show only first row Show all	>Lus10002647 pacid=23168790 polypeptide=Lus10002647 locus=Lus10002647.g ID=Lus10002647.BGIv1.0 annot-version=v1.0 MEICTSKPSAAAISTLPKLPTVITSARPLSRLHFSRSLRATTSLRCTQRSNTSEETQVGGGSPYVVEESNGFGGSSSATEETDGKTPAVEAVVDYEENVA EEQSSEGAAAAFPETVNDFLSDFNLKFDSEDTVSLVIYGSGALLALWLLSAVVNAVDSIPLFPKLMEVVGLGYSFWFTSRYLLFKKNRGELAEKVEELKQ QVLGTKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38100			unknown protein		Lus10002647 [exp]	0	1
AT4G40042			Microsomal signal peptidase 12...		Lus10011365 [exp]	1.0	0.8980
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	2.0	0.8897
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10023839 [exp]	8.0	0.8394
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	8.0	0.8750
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	10.1	0.8767
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	10.1	0.8853
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	11.5	0.8294
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	12.0	0.8538
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	12.2	0.8790
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	12.6	0.8800

Compare expression of checked genes

Lus10002647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.